Analysis of interatomic Contacts of Structural Units in PDB entry:
9XGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XGB entry

There are 3 chains in PDB entry 9XGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 4524ASP 4818
C
 MET 1GLY 76
A
 ASP 40THR 1051
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 9XGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
4524 4535Right-handed alpha
Helix 2
AA2
B
4559 4565Right-handed alpha
Helix 3
AA3
B
4571 4588Right-handed alpha
Helix 4
AA4
B
4687 4699Right-handed alpha
Helix 5
AA5
B
4703 4708Right-handed 310
Helix 6
AA6
B
4717 4738Right-handed alpha
Helix 7
AA7
B
4740 4746Right-handed alpha
Helix 8
AA8
B
4748 4750Right-handed 310
Helix 9
AA9
B
4751 4762Right-handed alpha
Helix 10
AB1
B
4764 4780Right-handed alpha
Helix 11
AB2
B
4786 4811Right-handed alpha
Helix 12
AB3
C
22 35Right-handed alpha
Helix 13
AB4
C
37 41Right-handed 310
Helix 14
AB5
A
47 52Right-handed alpha
Helix 15
AB6
A
52 60Right-handed alpha
Helix 16
AB7
A
70 84Right-handed alpha
Helix 17
AB8
A
97 103Right-handed 310
Helix 18
AB9
A
108 115Right-handed alpha
Helix 19
AC1
A
117 128Right-handed alpha
Helix 20
AC2
A
148 154Right-handed 310
Helix 21
AC3
A
163 176Right-handed alpha
Helix 22
AC4
A
253 257Right-handed 310
Helix 23
AC5
A
301 308Right-handed alpha
Helix 24
AC6
A
320 340Right-handed alpha
Helix 25
AC7
A
347 365Right-handed alpha
Helix 26
AC8
A
372 382Right-handed alpha
Helix 27
AC9
A
387 408Right-handed alpha
Helix 28
AD1
A
421 426Right-handed alpha
Helix 29
AD2
A
427 429Right-handed 310
Helix 30
AD3
A
433 437Right-handed 310
Helix 31
AD4
A
443 451Right-handed alpha
Helix 32
AD5
A
451 460Right-handed alpha
Helix 33
AD6
A
469 483Right-handed alpha
Helix 34
AD7
A
503 508Right-handed 310
Helix 35
AD8
A
513 517Right-handed 310
Helix 36
AD9
A
520 533Right-handed alpha
Helix 37
AE1
A
547 551Right-handed 310
Helix 38
AE2
A
554 561Right-handed alpha
Helix 39
AE3
A
570 584Right-handed alpha
Helix 40
AE4
A
623 630Right-handed alpha
Helix 41
AE5
A
633 650Right-handed alpha
Helix 42
AE6
A
650 663Right-handed alpha
Helix 43
AE7
A
665 675Right-handed alpha
Helix 44
AE8
A
681 691Right-handed alpha
Helix 45
AE9
A
695 712Right-handed alpha
Helix 46
AF1
A
712 722Right-handed alpha
Helix 47
AF2
A
751 769Right-handed alpha
Helix 48
AF3
A
775 778Right-handed 310
Helix 49
AF4
A
779 788Right-handed alpha
Helix 50
AF5
A
819 834Right-handed alpha
Helix 51
AF6
A
857 873Right-handed alpha
Helix 52
AF7
A
879 889Right-handed alpha
Helix 53
AF8
A
894 914Right-handed alpha
Helix 54
AF9
A
967 979Right-handed alpha
Helix 55
AG1
A
1000 1005Right-handed alpha
Helix 56
AG2
A
1008 1014Right-handed alpha
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There are 9 sheets in PDB entry 9XGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4537 4540first strand
Strand 2
B
4597 4602parallel
Strand 3
B
4608 4613anti-parallel
Strand 4
B
4626 4631anti-parallel
Strand 5
B
4642 4645anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4543 4545first strand
Strand 2
B
4551 4553anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
66 70parallel
Strand 4
C
42 44anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 138first strand
Strand 2
A
87 91parallel
Strand 3
A
63 67parallel
Strand 4
A
156 160parallel
Strand 5
A
182 189parallel
Strand 6
A
192 198anti-parallel
Strand 7
A
416 417anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
295 298anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
244 250anti-parallel
Strand 3
A
285 290anti-parallel
Strand 4
A
215 221anti-parallel
Strand 5
A
227 231anti-parallel
Strand 6
A
270 273anti-parallel
Strand 7
A
264 265anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 541first strand
Strand 2
A
492 496parallel
Strand 3
A
462 466parallel
Strand 4
A
563 566parallel
Strand 5
A
588 594parallel
Strand 6
A
597 603anti-parallel
Strand 7
A
922 927anti-parallel
Strand 8
A
932 937anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
944 947first strand
Strand 2
A
950 952anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1043 1046parallel
Strand 3
A
1021 1027anti-parallel
Strand 4
A
985 988anti-parallel
Strand 5
A
991 994anti-parallel
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