Analysis of interatomic Contacts of Structural Units in PDB entry:
9XGC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XGC entry

There are 4 chains in PDB entry 9XGC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 4524	ASP 4818
C	MET 1	GLY 76
D	MET 1	GLY 76
A	ASP 40	THR 1051

There are 54 helices in PDB entry 9XGC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	4524	4535	Right-handed alpha
Helix 2	AA2	B	4559	4565	Right-handed alpha
Helix 3	AA3	B	4571	4588	Right-handed alpha
Helix 4	AA4	B	4687	4698	Right-handed alpha
Helix 5	AA5	B	4703	4708	Right-handed 310
Helix 6	AA6	B	4717	4739	Right-handed alpha
Helix 7	AA7	B	4740	4746	Right-handed alpha
Helix 8	AA8	B	4748	4750	Right-handed 310
Helix 9	AA9	B	4751	4762	Right-handed alpha
Helix 10	AB1	B	4762	4781	Right-handed alpha
Helix 11	AB2	B	4786	4811	Right-handed alpha
Helix 12	AB3	C	22	35	Right-handed alpha
Helix 13	AB4	D	22	35	Right-handed alpha
Helix 14	AB5	A	47	52	Right-handed alpha
Helix 15	AB6	A	52	60	Right-handed alpha
Helix 16	AB7	A	70	84	Right-handed alpha
Helix 17	AB8	A	108	115	Right-handed alpha
Helix 18	AB9	A	117	128	Right-handed alpha
Helix 19	AC1	A	148	154	Right-handed 310
Helix 20	AC2	A	163	176	Right-handed alpha
Helix 21	AC3	A	253	257	Right-handed 310
Helix 22	AC4	A	301	308	Right-handed alpha
Helix 23	AC5	A	320	340	Right-handed alpha
Helix 24	AC6	A	347	365	Right-handed alpha
Helix 25	AC7	A	372	382	Right-handed alpha
Helix 26	AC8	A	387	408	Right-handed alpha
Helix 27	AC9	A	421	427	Right-handed alpha
Helix 28	AD1	A	432	436	Right-handed 310
Helix 29	AD2	A	443	451	Right-handed alpha
Helix 30	AD3	A	451	460	Right-handed alpha
Helix 31	AD4	A	469	483	Right-handed alpha
Helix 32	AD5	A	503	508	Right-handed 310
Helix 33	AD6	A	513	517	Right-handed 310
Helix 34	AD7	A	520	533	Right-handed alpha
Helix 35	AD8	A	546	550	Right-handed 310
Helix 36	AD9	A	554	561	Right-handed alpha
Helix 37	AE1	A	576	584	Right-handed alpha
Helix 38	AE2	A	623	629	Right-handed alpha
Helix 39	AE3	A	633	650	Right-handed alpha
Helix 40	AE4	A	650	663	Right-handed alpha
Helix 41	AE5	A	665	675	Right-handed alpha
Helix 42	AE6	A	681	691	Right-handed alpha
Helix 43	AE7	A	695	712	Right-handed alpha
Helix 44	AE8	A	712	722	Right-handed alpha
Helix 45	AE9	A	751	769	Right-handed alpha
Helix 46	AF1	A	775	778	Right-handed 310
Helix 47	AF2	A	779	788	Right-handed alpha
Helix 48	AF3	A	820	834	Right-handed alpha
Helix 49	AF4	A	858	873	Right-handed alpha
Helix 50	AF5	A	879	889	Right-handed alpha
Helix 51	AF6	A	894	914	Right-handed alpha
Helix 52	AF7	A	967	979	Right-handed alpha
Helix 53	AF8	A	1000	1005	Right-handed alpha
Helix 54	AF9	A	1008	1014	Right-handed alpha

There are 12 sheets in PDB entry 9XGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4537	4540	first strand
Strand 2	B	4597	4602	parallel
Strand 3	B	4608	4613	anti-parallel
Strand 4	B	4626	4631	anti-parallel
Strand 5	B	4642	4645	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4543	4545	first strand
Strand 2	B	4551	4553	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	66	68	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	70	71	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	48	49	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	6	anti-parallel
Strand 3	D	66	69	parallel
Strand 4	D	43	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	87	91	parallel
Strand 3	A	63	67	parallel
Strand 4	A	156	160	parallel
Strand 5	A	182	189	parallel
Strand 6	A	192	198	anti-parallel
Strand 7	A	416	417	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	205	first strand
Strand 2	A	295	298	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	262	first strand
Strand 2	A	244	250	anti-parallel
Strand 3	A	285	290	anti-parallel
Strand 4	A	215	221	anti-parallel
Strand 5	A	227	231	anti-parallel
Strand 6	A	270	273	anti-parallel
Strand 7	A	264	265	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	541	first strand
Strand 2	A	492	496	parallel
Strand 3	A	462	466	parallel
Strand 4	A	563	566	parallel
Strand 5	A	588	594	parallel
Strand 6	A	597	603	anti-parallel
Strand 7	A	922	927	anti-parallel
Strand 8	A	932	937	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	947	first strand
Strand 2	A	950	952	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	958	961	first strand
Strand 2	A	1043	1046	parallel
Strand 3	A	1021	1026	anti-parallel
Strand 4	A	986	988	anti-parallel
Strand 5	A	991	994	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XGC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XGC