Analysis of interatomic Contacts of Structural Units in PDB entry:
9XHH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XHH entry

There are 6 chains in PDB entry 9XHH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLY 1	THR 68
R	VAL 39	LYS 342
B	ASP 4	SER 341
C	GLN 11	ARG 62
A	GLY 2	PHE 354
D	ASP 1	LEU 235

There are 31 helices in PDB entry 9XHH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	18	22	Right-handed 310
Helix 2	AA2	L	29	33	Right-handed 310
Helix 3	AA3	L	55	68	Right-handed alpha
Helix 4	AA4	R	50	86	Right-handed alpha
Helix 5	AA5	R	91	120	Right-handed alpha
Helix 6	AA6	R	125	159	Right-handed alpha
Helix 7	AA7	R	160	167	Right-handed alpha
Helix 8	AA8	R	167	190	Right-handed alpha
Helix 9	AA9	R	190	196	Right-handed alpha
Helix 10	AB1	R	216	232	Right-handed alpha
Helix 11	AB2	R	232	251	Right-handed alpha
Helix 12	AB3	R	257	275	Right-handed alpha
Helix 13	AB4	R	276	291	Right-handed alpha
Helix 14	AB5	R	297	327	Right-handed alpha
Helix 15	AB6	R	330	342	Right-handed alpha
Helix 16	AB7	B	6	25	Right-handed alpha
Helix 17	AB8	B	28	32	Right-handed 310
Helix 18	AB9	C	12	24	Right-handed alpha
Helix 19	AC1	C	29	44	Right-handed alpha
Helix 20	AC2	A	6	32	Right-handed alpha
Helix 21	AC3	A	45	55	Right-handed alpha
Helix 22	AC4	A	207	216	Right-handed 310
Helix 23	AC5	A	228	230	Right-handed 310
Helix 24	AC6	A	241	255	Right-handed alpha
Helix 25	AC7	A	270	281	Right-handed alpha
Helix 26	AC8	A	282	286	Right-handed 310
Helix 27	AC9	A	295	310	Right-handed alpha
Helix 28	AD1	A	330	351	Right-handed alpha
Helix 29	AD2	D	28	32	Right-handed 310
Helix 30	AD3	D	53	56	Right-handed 310
Helix 31	AD4	D	87	91	Right-handed 310

There are 14 sheets in PDB entry 9XHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	28	first strand
Strand 2	L	38	42	anti-parallel
Strand 3	L	48	51	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	197	200	first strand
Strand 2	R	209	212	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	334	337	anti-parallel
Strand 3	B	326	329	anti-parallel
Strand 4	B	316	319	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	68	73	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	88	93	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	104	first strand
Strand 2	B	110	115	anti-parallel
Strand 3	B	120	124	anti-parallel
Strand 4	B	133	138	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	150	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	164	169	anti-parallel
Strand 4	B	174	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	207	211	anti-parallel
Strand 4	B	217	221	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	233	first strand
Strand 2	B	239	244	anti-parallel
Strand 3	B	249	253	anti-parallel
Strand 4	B	259	263	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	277	first strand
Strand 2	B	283	288	anti-parallel
Strand 3	B	293	297	anti-parallel
Strand 4	B	303	307	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	68	73	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	33	39	anti-parallel
Strand 4	D	93	99	anti-parallel
Strand 5	D	110	111	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	143	148	anti-parallel
Strand 3	D	199	204	anti-parallel
Strand 4	D	191	196	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	231	234	parallel
Strand 3	D	214	218	anti-parallel
Strand 4	D	163	167	anti-parallel
Strand 5	D	174	178	anti-parallel
Strand 6	D	182	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XHH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XHH