Analysis of interatomic Contacts of Structural Units in PDB entry:
9XHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XHM entry

There are 2 chains in PDB entry 9XHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29LYS 456
B
 ALA 29LYS 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9XHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 73Right-handed alpha
Helix 2
AA2
A
82 92Right-handed alpha
Helix 3
AA3
A
100 114Right-handed alpha
Helix 4
AA4
A
129 140Right-handed alpha
Helix 5
AA5
A
200 214Right-handed alpha
Helix 6
AA6
A
225 242Right-handed alpha
Helix 7
AA7
A
275 288Right-handed alpha
Helix 8
AA8
A
296 301Right-handed alpha
Helix 9
AA9
A
306 325Right-handed alpha
Helix 10
AB1
A
336 349Right-handed alpha
Helix 11
AB2
A
350 355Right-handed alpha
Helix 12
AB3
A
389 396Right-handed alpha
Helix 13
AB4
A
409 411Right-handed 310
Helix 14
AB5
A
419 423Right-handed 310
Helix 15
AB6
A
438 455Right-handed alpha
Helix 16
AB7
B
61 73Right-handed alpha
Helix 17
AB8
B
82 92Right-handed alpha
Helix 18
AB9
B
99 113Right-handed alpha
Helix 19
AC1
B
129 140Right-handed alpha
Helix 20
AC2
B
200 214Right-handed alpha
Helix 21
AC3
B
225 243Right-handed alpha
Helix 22
AC4
B
275 288Right-handed alpha
Helix 23
AC5
B
296 301Right-handed alpha
Helix 24
AC6
B
306 326Right-handed alpha
Helix 25
AC7
B
336 348Right-handed alpha
Helix 26
AC8
B
350 356Right-handed alpha
Helix 27
AC9
B
376 380Right-handed 310
Helix 28
AD1
B
389 395Right-handed alpha
Helix 29
AD2
B
416 423Right-handed 310
Helix 30
AD3
B
438 456Right-handed alpha
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There are 5 sheets in PDB entry 9XHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
49 54parallel
Strand 4
A
123 128parallel
Strand 5
A
149 153parallel
Strand 6
A
191 195parallel
Strand 7
A
218 221parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
177 178anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
292 295anti-parallel
Strand 3
A
263 268parallel
Strand 4
A
329 335parallel
Strand 5
A
357 363parallel
Strand 6
A
402 407parallel
Strand 7
A
425 429parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
76 79anti-parallel
Strand 3
B
49 54parallel
Strand 4
B
123 128parallel
Strand 5
B
149 153parallel
Strand 6
B
191 195parallel
Strand 7
B
218 221parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 255first strand
Strand 2
B
292 295anti-parallel
Strand 3
B
263 268parallel
Strand 4
B
329 335parallel
Strand 5
B
357 363parallel
Strand 6
B
402 407parallel
Strand 7
B
425 429parallel
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