Analysis of interatomic Contacts of Structural Units in PDB entry:
9XJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XJ1 entry

There are 18 chains in PDB entry 9XJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	SER 38	PRO 237
2	ALA 60	PHE 266
3	ASP 46	HIS 268
4	LYS 54	SER 251
A	GLU 9	GLY 750
B	GLU 2	GLY 734
C	SER 2	TYR 81
D	GLY 63	ILE 205
E	PRO 71	VAL 135
F	ASP 67	TYR 224
G	LEU 49	PHE 145
H	TYR 49	LYS 141
I	ASN 5	LYS 34
J	MET 1	PHE 44
K	TYR 47	GLY 134
L	PRO 49	LYS 211
N	VAL 62	TRP 145
O	THR 36	LYS 127

There are152 helices in PDB entry 9XJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	69	100	Right-handed alpha
Helix 2	AA2	1	106	114	Right-handed 310
Helix 3	AA3	1	130	152	Right-handed alpha
Helix 4	AA4	1	154	160	Right-handed alpha
Helix 5	AA5	1	162	166	Right-handed 310
Helix 6	AA6	1	173	205	Right-handed alpha
Helix 7	AA7	1	209	220	Right-handed alpha
Helix 8	AA8	1	226	231	Right-handed alpha
Helix 9	AA9	2	95	119	Right-handed alpha
Helix 10	AB1	2	121	130	Right-handed alpha
Helix 11	AB2	2	148	173	Right-handed alpha
Helix 12	AB3	2	197	202	Right-handed alpha
Helix 13	AB4	2	210	242	Right-handed alpha
Helix 14	AB5	2	245	256	Right-handed alpha
Helix 15	AB6	2	261	266	Right-handed 310
Helix 16	AB7	3	55	59	Right-handed 310
Helix 17	AB8	3	86	117	Right-handed alpha
Helix 18	AB9	3	122	126	Right-handed 310
Helix 19	AC1	3	127	131	Right-handed 310
Helix 20	AC2	3	145	170	Right-handed alpha
Helix 21	AC3	3	172	176	Right-handed 310
Helix 22	AC4	3	181	186	Right-handed 310
Helix 23	AC5	3	196	201	Right-handed alpha
Helix 24	AC6	3	209	241	Right-handed alpha
Helix 25	AC7	3	244	255	Right-handed alpha
Helix 26	AC8	3	262	267	Right-handed 310
Helix 27	AC9	4	85	120	Right-handed alpha
Helix 28	AD1	4	138	163	Right-handed alpha
Helix 29	AD2	4	164	167	Right-handed 310
Helix 30	AD3	4	198	227	Right-handed alpha
Helix 31	AD4	4	229	240	Right-handed alpha
Helix 32	AD5	4	245	250	Right-handed alpha
Helix 33	AD6	A	33	38	Right-handed alpha
Helix 34	AD7	A	43	52	Right-handed alpha
Helix 35	AD8	A	55	60	Right-handed alpha
Helix 36	AD9	A	62	95	Right-handed alpha
Helix 37	AE1	A	97	104	Right-handed alpha
Helix 38	AE2	A	120	125	Right-handed 310
Helix 39	AE3	A	140	149	Right-handed alpha
Helix 40	AE4	A	152	180	Right-handed alpha
Helix 41	AE5	A	184	189	Right-handed alpha
Helix 42	AE6	A	190	201	Right-handed alpha
Helix 43	AE7	A	203	217	Right-handed alpha
Helix 44	AE8	A	217	227	Right-handed alpha
Helix 45	AE9	A	230	234	Right-handed 310
Helix 46	AF1	A	236	243	Right-handed alpha
Helix 47	AF2	A	243	251	Right-handed alpha
Helix 48	AF3	A	252	257	Right-handed 310
Helix 49	AF4	A	258	263	Right-handed alpha
Helix 50	AF5	A	265	271	Right-handed 310
Helix 51	AF6	A	287	306	Right-handed alpha
Helix 52	AF7	A	318	326	Right-handed alpha
Helix 53	AF8	A	337	345	Right-handed alpha
Helix 54	AF9	A	345	371	Right-handed alpha
Helix 55	AG1	A	380	413	Right-handed alpha
Helix 56	AG2	A	421	430	Right-handed alpha
Helix 57	AG3	A	430	462	Right-handed alpha
Helix 58	AG4	A	464	468	Right-handed 310
Helix 59	AG5	A	478	495	Right-handed alpha
Helix 60	AG6	A	527	554	Right-handed alpha
Helix 61	AG7	A	563	568	Right-handed alpha
Helix 62	AG8	A	585	616	Right-handed alpha
Helix 63	AG9	A	633	638	Right-handed alpha
Helix 64	AH1	A	640	648	Right-handed alpha
Helix 65	AH2	A	648	653	Right-handed alpha
Helix 66	AH3	A	653	658	Right-handed alpha
Helix 67	AH4	A	664	687	Right-handed alpha
Helix 68	AH5	A	688	706	Right-handed alpha
Helix 69	AH6	A	720	749	Right-handed alpha
Helix 70	AH7	B	9	14	Right-handed alpha
Helix 71	AH8	B	18	27	Right-handed alpha
Helix 72	AH9	B	30	34	Right-handed 310
Helix 73	AI1	B	38	72	Right-handed alpha
Helix 74	AI2	B	73	80	Right-handed alpha
Helix 75	AI3	B	97	104	Right-handed alpha
Helix 76	AI4	B	119	127	Right-handed alpha
Helix 77	AI5	B	131	156	Right-handed alpha
Helix 78	AI6	B	164	169	Right-handed alpha
Helix 79	AI7	B	170	181	Right-handed alpha
Helix 80	AI8	B	183	197	Right-handed alpha
Helix 81	AI9	B	197	203	Right-handed alpha
Helix 82	AJ1	B	211	215	Right-handed 310
Helix 83	AJ2	B	222	228	Right-handed alpha
Helix 84	AJ3	B	230	235	Right-handed alpha
Helix 85	AJ4	B	269	288	Right-handed alpha
Helix 86	AJ5	B	300	308	Right-handed alpha
Helix 87	AJ6	B	321	328	Right-handed alpha
Helix 88	AJ7	B	329	355	Right-handed alpha
Helix 89	AJ8	B	364	397	Right-handed alpha
Helix 90	AJ9	B	400	404	Right-handed 310
Helix 91	AK1	B	406	414	Right-handed alpha
Helix 92	AK2	B	414	446	Right-handed alpha
Helix 93	AK3	B	448	452	Right-handed 310
Helix 94	AK4	B	457	468	Right-handed alpha
Helix 95	AK5	B	483	490	Right-handed alpha
Helix 96	AK6	B	493	503	Right-handed alpha
Helix 97	AK7	B	513	540	Right-handed alpha
Helix 98	AK8	B	549	554	Right-handed alpha
Helix 99	AK9	B	571	604	Right-handed alpha
Helix 100	AL1	B	605	613	Right-handed alpha
Helix 101	AL2	B	615	623	Right-handed alpha
Helix 102	AL3	B	623	628	Right-handed alpha
Helix 103	AL4	B	628	633	Right-handed alpha
Helix 104	AL5	B	643	666	Right-handed alpha
Helix 105	AL6	B	667	685	Right-handed alpha
Helix 106	AL7	B	701	733	Right-handed alpha
Helix 107	AL8	C	15	21	Right-handed alpha
Helix 108	AL9	C	44	48	Right-handed 310
Helix 109	AM1	C	52	57	Right-handed alpha
Helix 110	AM2	D	86	92	Right-handed alpha
Helix 111	AM3	D	128	143	Right-handed alpha
Helix 112	AM4	D	185	189	Right-handed 310
Helix 113	AM5	D	191	195	Right-handed 310
Helix 114	AM6	E	128	130	Right-handed 310
Helix 115	AM7	F	67	71	Right-handed 310
Helix 116	AM8	F	77	97	Right-handed alpha
Helix 117	AM9	F	102	125	Right-handed alpha
Helix 118	AN1	F	142	146	Right-handed 310
Helix 119	AN2	F	149	175	Right-handed alpha
Helix 120	AN3	F	179	186	Right-handed alpha
Helix 121	AN4	F	188	196	Right-handed alpha
Helix 122	AN5	F	197	200	Right-handed 310
Helix 123	AN6	F	201	212	Right-handed alpha
Helix 124	AN7	F	218	222	Right-handed 310
Helix 125	AN8	G	50	68	Right-handed alpha
Helix 126	AN9	G	70	80	Right-handed alpha
Helix 127	AO1	G	90	94	Right-handed alpha
Helix 128	AO2	G	114	138	Right-handed alpha
Helix 129	AO3	H	60	66	Right-handed alpha
Helix 130	AO4	H	80	91	Right-handed alpha
Helix 131	AO5	H	92	95	Right-handed 310
Helix 132	AO6	H	96	119	Right-handed alpha
Helix 133	AO7	I	6	16	Right-handed alpha
Helix 134	AO8	I	16	32	Right-handed alpha
Helix 135	AO9	J	2	9	Right-handed alpha
Helix 136	AP1	J	10	33	Right-handed alpha
Helix 137	AP2	K	50	69	Right-handed alpha
Helix 138	AP3	K	101	127	Right-handed alpha
Helix 139	AP4	L	68	73	Right-handed alpha
Helix 140	AP5	L	73	82	Right-handed alpha
Helix 141	AP6	L	83	87	Right-handed 310
Helix 142	AP7	L	91	115	Right-handed alpha
Helix 143	AP8	L	122	150	Right-handed alpha
Helix 144	AP9	L	171	174	Right-handed 310
Helix 145	AQ1	L	175	203	Right-handed alpha
Helix 146	AQ2	N	63	73	Right-handed alpha
Helix 147	AQ3	N	73	91	Right-handed alpha
Helix 148	AQ4	N	108	116	Right-handed alpha
Helix 149	AQ5	N	120	128	Right-handed alpha
Helix 150	AQ6	O	46	61	Right-handed alpha
Helix 151	AQ7	O	69	83	Right-handed alpha
Helix 152	AQ8	O	94	123	Right-handed alpha

There are 15 sheets in PDB entry 9XJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	120	121	first strand
Strand 2	1	124	125	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	181	183	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	133	136	anti-parallel
Strand 3	A	126	127	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	515	first strand
Strand 2	A	518	521	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	626	628	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	181	182	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	126	first strand
Strand 2	D	95	101	anti-parallel
Strand 3	D	147	151	anti-parallel
Strand 4	D	159	160	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	108	first strand
Strand 2	D	114	117	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	127	first strand
Strand 2	E	110	113	anti-parallel
Strand 3	E	94	100	anti-parallel
Strand 4	E	80	83	anti-parallel
Strand 5	E	132	134	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	73	first strand
Strand 2	F	128	129	anti-parallel
Strand 3	F	135	136	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	85	first strand
Strand 2	G	88	89	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	77	79	first strand
Strand 2	K	85	87	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XJ1