Analysis of interatomic Contacts of Structural Units in PDB entry:
9XJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XJ8 entry

There are 3 chains in PDB entry 9XJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 15	ASP 701
B	GLU 15	ASP 701
E	TRP 93	PRO 372

There are 60 helices in PDB entry 9XJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	36	Right-handed alpha
Helix 2	AA2	A	42	66	Right-handed alpha
Helix 3	AA3	A	67	71	Right-handed 310
Helix 4	AA4	A	99	108	Right-handed alpha
Helix 5	AA5	A	113	121	Right-handed alpha
Helix 6	AA6	A	137	143	Right-handed 310
Helix 7	AA7	A	194	198	Right-handed 310
Helix 8	AA8	A	199	211	Right-handed alpha
Helix 9	AA9	A	295	299	Right-handed 310
Helix 10	AB1	A	300	304	Right-handed 310
Helix 11	AB2	A	305	318	Right-handed alpha
Helix 12	AB3	A	379	383	Right-handed 310
Helix 13	AB4	A	405	430	Right-handed alpha
Helix 14	AB5	A	430	452	Right-handed alpha
Helix 15	AB6	A	455	463	Right-handed alpha
Helix 16	AB7	A	476	484	Right-handed alpha
Helix 17	AB8	A	498	504	Right-handed alpha
Helix 18	AB9	A	505	507	Right-handed 310
Helix 19	AC1	A	508	514	Right-handed alpha
Helix 20	AC2	A	524	531	Right-handed alpha
Helix 21	AC3	A	554	580	Right-handed alpha
Helix 22	AC4	A	607	616	Right-handed alpha
Helix 23	AC5	A	640	653	Right-handed alpha
Helix 24	AC6	A	656	675	Right-handed alpha
Helix 25	AC7	A	680	696	Right-handed alpha
Helix 26	AC8	B	25	36	Right-handed alpha
Helix 27	AC9	B	42	66	Right-handed alpha
Helix 28	AD1	B	66	73	Right-handed alpha
Helix 29	AD2	B	99	108	Right-handed alpha
Helix 30	AD3	B	113	122	Right-handed alpha
Helix 31	AD4	B	137	143	Right-handed 310
Helix 32	AD5	B	194	198	Right-handed 310
Helix 33	AD6	B	199	210	Right-handed alpha
Helix 34	AD7	B	300	304	Right-handed 310
Helix 35	AD8	B	305	318	Right-handed alpha
Helix 36	AD9	B	379	383	Right-handed 310
Helix 37	AE1	B	405	430	Right-handed alpha
Helix 38	AE2	B	430	452	Right-handed alpha
Helix 39	AE3	B	455	463	Right-handed alpha
Helix 40	AE4	B	477	484	Right-handed alpha
Helix 41	AE5	B	498	504	Right-handed alpha
Helix 42	AE6	B	507	515	Right-handed alpha
Helix 43	AE7	B	524	533	Right-handed alpha
Helix 44	AE8	B	554	580	Right-handed alpha
Helix 45	AE9	B	607	616	Right-handed alpha
Helix 46	AF1	B	622	629	Right-handed alpha
Helix 47	AF2	B	640	653	Right-handed alpha
Helix 48	AF3	B	656	675	Right-handed alpha
Helix 49	AF4	B	680	696	Right-handed alpha
Helix 50	AF5	E	153	160	Right-handed alpha
Helix 51	AF6	E	161	163	Right-handed 310
Helix 52	AF7	E	175	178	Right-handed 310
Helix 53	AF8	E	209	213	Right-handed 310
Helix 54	AF9	E	214	235	Right-handed alpha
Helix 55	AG1	E	237	254	Right-handed alpha
Helix 56	AG2	E	261	286	Right-handed alpha
Helix 57	AG3	E	288	303	Right-handed alpha
Helix 58	AG4	E	306	320	Right-handed alpha
Helix 59	AG5	E	322	337	Right-handed alpha
Helix 60	AG6	E	340	369	Right-handed alpha

There are 13 sheets in PDB entry 9XJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	174	first strand
Strand 2	A	159	164	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	183	190	anti-parallel
Strand 5	A	88	93	anti-parallel
Strand 6	A	78	83	anti-parallel
Strand 7	A	218	219	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	B	23	24	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	279	282	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	331	first strand
Strand 2	A	337	343	anti-parallel
Strand 3	A	386	391	anti-parallel
Strand 4	A	362	365	parallel
Strand 5	A	369	371	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	519	521	anti-parallel
Strand 3	A	490	495	parallel
Strand 4	A	539	543	parallel
Strand 5	A	535	536	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	588	first strand
Strand 2	A	632	636	parallel
Strand 3	A	597	601	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	174	first strand
Strand 2	B	159	164	anti-parallel
Strand 3	B	145	153	anti-parallel
Strand 4	B	183	190	anti-parallel
Strand 5	B	88	93	anti-parallel
Strand 6	B	78	83	anti-parallel
Strand 7	B	218	219	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	279	282	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	337	343	anti-parallel
Strand 3	B	330	331	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	327	first strand
Strand 2	B	337	343	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	362	365	parallel
Strand 5	B	369	371	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	476	first strand
Strand 2	B	464	467	anti-parallel
Strand 3	B	518	521	anti-parallel
Strand 4	B	490	495	parallel
Strand 5	B	539	543	parallel
Strand 6	B	535	536	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	588	first strand
Strand 2	B	632	636	parallel
Strand 3	B	597	601	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	102	108	anti-parallel
Strand 3	E	168	173	anti-parallel
Strand 4	E	195	205	anti-parallel
Strand 5	E	122	131	anti-parallel
Strand 6	E	142	146	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XJ8