Analysis of interatomic Contacts of Structural Units in PDB entry:
9XJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XJM entry

There are 4 chains in PDB entry 9XJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 3	ILE 379
B	PHE 3	ILE 379
C	PHE 3	ILE 379
D	PHE 3	ILE 379

There are 46 helices in PDB entry 9XJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	33	Right-handed alpha
Helix 2	AA2	A	55	69	Right-handed alpha
Helix 3	AA3	A	82	90	Right-handed alpha
Helix 4	AA4	A	118	130	Right-handed alpha
Helix 5	AA5	A	144	155	Right-handed alpha
Helix 6	AA6	A	170	184	Right-handed alpha
Helix 7	AA7	A	194	208	Right-handed alpha
Helix 8	AA8	A	230	236	Right-handed alpha
Helix 9	AA9	A	251	261	Right-handed alpha
Helix 10	AB1	A	276	298	Right-handed alpha
Helix 11	AB2	A	319	321	Right-handed 310
Helix 12	AB3	A	322	330	Right-handed alpha
Helix 13	AB4	B	18	33	Right-handed alpha
Helix 14	AB5	B	55	69	Right-handed alpha
Helix 15	AB6	B	82	90	Right-handed alpha
Helix 16	AB7	B	118	130	Right-handed alpha
Helix 17	AB8	B	144	158	Right-handed alpha
Helix 18	AB9	B	170	184	Right-handed alpha
Helix 19	AC1	B	194	208	Right-handed alpha
Helix 20	AC2	B	230	236	Right-handed alpha
Helix 21	AC3	B	251	261	Right-handed alpha
Helix 22	AC4	B	276	298	Right-handed alpha
Helix 23	AC5	B	321	330	Right-handed alpha
Helix 24	AC6	C	18	33	Right-handed alpha
Helix 25	AC7	C	55	69	Right-handed alpha
Helix 26	AC8	C	82	90	Right-handed alpha
Helix 27	AC9	C	118	130	Right-handed alpha
Helix 28	AD1	C	144	155	Right-handed alpha
Helix 29	AD2	C	170	184	Right-handed alpha
Helix 30	AD3	C	194	208	Right-handed alpha
Helix 31	AD4	C	230	236	Right-handed alpha
Helix 32	AD5	C	251	261	Right-handed alpha
Helix 33	AD6	C	276	298	Right-handed alpha
Helix 34	AD7	C	319	321	Right-handed 310
Helix 35	AD8	C	322	330	Right-handed alpha
Helix 36	AD9	D	18	33	Right-handed alpha
Helix 37	AE1	D	55	69	Right-handed alpha
Helix 38	AE2	D	82	90	Right-handed alpha
Helix 39	AE3	D	118	130	Right-handed alpha
Helix 40	AE4	D	144	158	Right-handed alpha
Helix 41	AE5	D	170	184	Right-handed alpha
Helix 42	AE6	D	194	208	Right-handed alpha
Helix 43	AE7	D	230	236	Right-handed alpha
Helix 44	AE8	D	251	261	Right-handed alpha
Helix 45	AE9	D	276	298	Right-handed alpha
Helix 46	AF1	D	321	330	Right-handed alpha

There are 16 sheets in PDB entry 9XJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	8	12	parallel
Strand 3	A	73	76	parallel
Strand 4	A	96	99	parallel
Strand 5	A	111	113	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	137	138	parallel
Strand 3	A	191	192	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	238	243	parallel
Strand 3	A	353	359	anti-parallel
Strand 4	A	364	371	anti-parallel
Strand 5	A	376	378	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	339	342	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	8	12	parallel
Strand 3	B	73	76	parallel
Strand 4	B	96	99	parallel
Strand 5	B	111	113	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	137	138	parallel
Strand 3	B	191	192	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	238	243	parallel
Strand 3	B	353	359	anti-parallel
Strand 4	B	364	371	anti-parallel
Strand 5	B	376	378	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	339	342	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	8	12	parallel
Strand 3	C	73	76	parallel
Strand 4	C	96	99	parallel
Strand 5	C	111	113	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	137	138	parallel
Strand 3	C	191	192	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	238	243	parallel
Strand 3	C	353	359	anti-parallel
Strand 4	C	364	371	anti-parallel
Strand 5	C	376	378	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	336	first strand
Strand 2	C	339	342	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	8	12	parallel
Strand 3	D	73	76	parallel
Strand 4	D	96	99	parallel
Strand 5	D	111	113	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	137	138	parallel
Strand 3	D	191	192	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	238	243	parallel
Strand 3	D	353	359	anti-parallel
Strand 4	D	364	371	anti-parallel
Strand 5	D	376	378	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	336	first strand
Strand 2	D	339	342	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XJM