Analysis of interatomic Contacts of Structural Units in PDB entry:
9XLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XLC entry

There is 1 chain in PDB entry 9XLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 18SER 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 9XLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 37Right-handed 310
Helix 2
AA2
A
223 227Right-handed 310
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There are 5 sheets in PDB entry 9XLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
265 277anti-parallel
Strand 3
A
72 84anti-parallel
Strand 4
A
66 69anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
87 93parallel
Strand 3
A
72 84anti-parallel
Strand 4
A
265 277anti-parallel
Strand 5
A
105 112anti-parallel
Strand 6
A
195 203anti-parallel
Strand 7
A
206 211anti-parallel
Strand 8
A
214 218anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
95 98anti-parallel
Strand 3
A
232 239anti-parallel
Strand 4
A
120 127anti-parallel
Strand 5
A
143 151anti-parallel
Strand 6
A
161 168anti-parallel
Strand 7
A
174 181anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
139 141anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
250 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il