Analysis of interatomic Contacts of Structural Units in PDB entry:
9XMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XMM entry

There are 2 chains in PDB entry 9XMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1ILE 442
B
 ASP 113GLY 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9XMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
188 194Right-handed alpha
Helix 2
AA2
A
214 218Right-handed 310
Helix 3
AA3
A
366 370Right-handed 310
Helix 4
AA4
B
125 129Right-handed 310
Helix 5
AA5
B
131 150Right-handed alpha
Helix 6
AA6
B
172 177Right-handed alpha
Helix 7
AA7
B
203 212Right-handed alpha
Helix 8
AA8
B
224 235Right-handed alpha
Helix 9
AA9
B
259 267Right-handed 310
Helix 10
AB1
B
294 305Right-handed alpha
Helix 11
AB2
B
317 328Right-handed alpha
Helix 12
AB3
B
340 353Right-handed alpha
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There are 11 sheets in PDB entry 9XMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
432 436anti-parallel
Strand 3
A
422 427anti-parallel
Strand 4
A
410 413anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
67 69anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
84 85anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
113 114anti-parallel
Strand 3
A
123 124anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 101first strand
Strand 2
A
104 109anti-parallel
Strand 3
A
127 132anti-parallel
Strand 4
A
135 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
208 209anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 229first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
263 268anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
314 320anti-parallel
Strand 4
A
326 332anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
309 311anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 346first strand
Strand 2
A
358 362anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
389 392anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 200first strand
Strand 2
B
153 160anti-parallel
Strand 3
B
116 123parallel
Strand 4
B
246 253parallel
Strand 5
B
307 313parallel
Strand 6
B
332 335parallel
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