Analysis of interatomic Contacts of Structural Units in PDB entry:
9XO4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XO4 entry

There are 3 chains in PDB entry 9XO4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 33	VAL 1231
B	ARG 33	VAL 1231
C	GLN 21	ILE 1242

There are 59 helices in PDB entry 9XO4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	40	Right-handed 310
Helix 2	AA2	A	233	238	Right-handed alpha
Helix 3	AA3	A	325	330	Right-handed alpha
Helix 4	AA4	A	466	476	Right-handed alpha
Helix 5	AA5	A	807	813	Right-handed alpha
Helix 6	AA6	A	816	824	Right-handed alpha
Helix 7	AA7	A	830	852	Right-handed alpha
Helix 8	AA8	A	855	860	Right-handed alpha
Helix 9	AA9	A	874	878	Right-handed 310
Helix 10	AB1	A	895	903	Right-handed alpha
Helix 11	AB2	A	917	922	Right-handed alpha
Helix 12	AB3	A	928	936	Right-handed alpha
Helix 13	AB4	A	946	959	Right-handed alpha
Helix 14	AB5	A	973	986	Right-handed alpha
Helix 15	AB6	A	997	1014	Right-handed alpha
Helix 16	AB7	A	1030	1045	Right-handed alpha
Helix 17	AB8	A	1046	1055	Right-handed alpha
Helix 18	AB9	A	1066	1074	Right-handed alpha
Helix 19	AC1	A	1075	1123	Right-handed alpha
Helix 20	AC2	A	1216	1218	Right-handed 310
Helix 21	AC3	B	233	239	Right-handed alpha
Helix 22	AC4	B	325	331	Right-handed alpha
Helix 23	AC5	B	466	476	Right-handed alpha
Helix 24	AC6	B	816	825	Right-handed alpha
Helix 25	AC7	B	830	852	Right-handed alpha
Helix 26	AC8	B	855	861	Right-handed alpha
Helix 27	AC9	B	895	903	Right-handed alpha
Helix 28	AD1	B	917	922	Right-handed alpha
Helix 29	AD2	B	928	936	Right-handed alpha
Helix 30	AD3	B	946	959	Right-handed alpha
Helix 31	AD4	B	974	986	Right-handed alpha
Helix 32	AD5	B	997	1014	Right-handed alpha
Helix 33	AD6	B	1030	1045	Right-handed alpha
Helix 34	AD7	B	1046	1055	Right-handed alpha
Helix 35	AD8	B	1066	1074	Right-handed alpha
Helix 36	AD9	B	1075	1123	Right-handed alpha
Helix 37	AE1	B	1216	1218	Right-handed 310
Helix 38	AE2	C	221	225	Right-handed 310
Helix 39	AE3	C	325	330	Right-handed 310
Helix 40	AE4	C	354	358	Right-handed 310
Helix 41	AE5	C	466	475	Right-handed alpha
Helix 42	AE6	C	807	813	Right-handed alpha
Helix 43	AE7	C	816	824	Right-handed alpha
Helix 44	AE8	C	828	852	Right-handed alpha
Helix 45	AE9	C	855	860	Right-handed alpha
Helix 46	AF1	C	895	904	Right-handed alpha
Helix 47	AF2	C	917	921	Right-handed 310
Helix 48	AF3	C	928	936	Right-handed alpha
Helix 49	AF4	C	946	960	Right-handed alpha
Helix 50	AF5	C	961	963	Right-handed 310
Helix 51	AF6	C	973	986	Right-handed alpha
Helix 52	AF7	C	997	1015	Right-handed alpha
Helix 53	AF8	C	1030	1044	Right-handed alpha
Helix 54	AF9	C	1046	1054	Right-handed alpha
Helix 55	AG1	C	1066	1074	Right-handed alpha
Helix 56	AG2	C	1075	1123	Right-handed alpha
Helix 57	AG3	C	1216	1218	Right-handed 310
Helix 58	AG4	C	1234	1236	Right-handed 310
Helix 59	AG5	C	1237	1242	Right-handed alpha

There are 47 sheets in PDB entry 9XO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	213	217	anti-parallel
Strand 3	A	226	229	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	165	167	anti-parallel
Strand 3	A	79	81	anti-parallel
Strand 4	A	206	207	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	278	first strand
Strand 2	A	446	454	anti-parallel
Strand 3	A	458	463	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	286	first strand
Strand 2	A	438	444	anti-parallel
Strand 3	A	318	323	anti-parallel
Strand 4	A	397	401	anti-parallel
Strand 5	A	405	407	anti-parallel
Strand 6	A	414	415	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	298	first strand
Strand 2	A	419	424	anti-parallel
Strand 3	A	335	339	anti-parallel
Strand 4	A	344	350	anti-parallel
Strand 5	A	371	378	anti-parallel
Strand 6	A	387	391	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	488	first strand
Strand 2	A	703	708	anti-parallel
Strand 3	A	713	718	anti-parallel
Strand 4	A	735	738	anti-parallel
Strand 5	A	727	730	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	502	first strand
Strand 2	A	649	654	parallel
Strand 3	A	657	665	anti-parallel
Strand 4	A	694	698	anti-parallel
Strand 5	A	683	687	anti-parallel
Strand 6	A	675	677	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	536	first strand
Strand 2	A	510	521	anti-parallel
Strand 3	A	548	559	parallel
Strand 4	A	613	630	parallel
Strand 5	A	584	591	anti-parallel
Strand 6	A	541	543	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	536	first strand
Strand 2	A	510	521	anti-parallel
Strand 3	A	548	559	parallel
Strand 4	A	613	630	parallel
Strand 5	A	601	605	anti-parallel
Strand 6	A	568	569	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	749	first strand
Strand 2	A	755	757	anti-parallel
Strand 3	A	762	763	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	798	first strand
Strand 2	A	1150	1169	anti-parallel
Strand 3	A	1141	1147	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	798	first strand
Strand 2	A	1150	1169	anti-parallel
Strand 3	A	1187	1191	anti-parallel
Strand 4	A	1203	1206	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	804	806	first strand
Strand 2	A	938	940	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1172	1174	first strand
Strand 2	A	1178	1182	anti-parallel
Strand 3	A	1220	1222	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	213	217	anti-parallel
Strand 3	B	226	229	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	165	167	anti-parallel
Strand 3	B	79	81	anti-parallel
Strand 4	B	206	207	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	286	first strand
Strand 2	B	438	454	anti-parallel
Strand 3	B	318	323	anti-parallel
Strand 4	B	397	401	anti-parallel
Strand 5	B	405	407	anti-parallel
Strand 6	B	414	415	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	286	first strand
Strand 2	B	438	454	anti-parallel
Strand 3	B	458	463	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	419	424	anti-parallel
Strand 3	B	335	339	anti-parallel
Strand 4	B	343	350	anti-parallel
Strand 5	B	371	378	anti-parallel
Strand 6	B	385	391	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	488	first strand
Strand 2	B	703	708	anti-parallel
Strand 3	B	713	718	anti-parallel
Strand 4	B	735	738	anti-parallel
Strand 5	B	727	730	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	502	first strand
Strand 2	B	650	654	parallel
Strand 3	B	657	666	anti-parallel
Strand 4	B	694	699	anti-parallel
Strand 5	B	683	687	anti-parallel
Strand 6	B	675	677	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	536	first strand
Strand 2	B	510	520	anti-parallel
Strand 3	B	548	557	parallel
Strand 4	B	613	630	parallel
Strand 5	B	584	591	anti-parallel
Strand 6	B	541	543	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	536	first strand
Strand 2	B	510	520	anti-parallel
Strand 3	B	548	557	parallel
Strand 4	B	613	630	parallel
Strand 5	B	601	605	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	750	first strand
Strand 2	B	755	756	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	780	786	first strand
Strand 2	B	1162	1169	anti-parallel
Strand 3	B	1187	1191	anti-parallel
Strand 4	B	1203	1206	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	789	798	first strand
Strand 2	B	1150	1159	anti-parallel
Strand 3	B	1141	1147	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	806	first strand
Strand 2	B	938	940	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1171	1174	first strand
Strand 2	B	1178	1182	anti-parallel
Strand 3	B	1220	1222	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	28	30	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	213	217	anti-parallel
Strand 3	C	227	229	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	195	196	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	189	192	anti-parallel
Strand 3	C	96	97	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	184	first strand
Strand 2	C	172	176	anti-parallel
Strand 3	C	162	168	anti-parallel
Strand 4	C	79	84	anti-parallel
Strand 5	C	205	207	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	106	111	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	153	155	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	288	first strand
Strand 2	C	438	454	anti-parallel
Strand 3	C	318	322	anti-parallel
Strand 4	C	397	401	anti-parallel
Strand 5	C	405	408	anti-parallel
Strand 6	C	412	415	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	288	first strand
Strand 2	C	438	454	anti-parallel
Strand 3	C	458	463	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	298	first strand
Strand 2	C	419	426	anti-parallel
Strand 3	C	335	339	anti-parallel
Strand 4	C	344	345	anti-parallel
Strand 5	C	372	379	anti-parallel
Strand 6	C	349	350	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	298	first strand
Strand 2	C	419	426	anti-parallel
Strand 3	C	335	339	anti-parallel
Strand 4	C	344	345	anti-parallel
Strand 5	C	372	379	anti-parallel
Strand 6	C	382	390	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	488	first strand
Strand 2	C	703	706	anti-parallel
Strand 3	C	715	717	anti-parallel
Strand 4	C	734	738	anti-parallel
Strand 5	C	727	731	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	510	519	anti-parallel
Strand 3	C	548	557	parallel
Strand 4	C	613	630	parallel
Strand 5	C	584	591	anti-parallel
Strand 6	C	541	543	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	510	519	anti-parallel
Strand 3	C	548	557	parallel
Strand 4	C	613	630	parallel
Strand 5	C	601	607	anti-parallel
Strand 6	C	564	569	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	654	first strand
Strand 2	C	657	666	anti-parallel
Strand 3	C	694	698	anti-parallel
Strand 4	C	683	687	anti-parallel
Strand 5	C	675	677	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	747	751	first strand
Strand 2	C	754	757	anti-parallel
Strand 3	C	762	764	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	780	798	first strand
Strand 2	C	1150	1169	anti-parallel
Strand 3	C	1138	1147	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	780	798	first strand
Strand 2	C	1150	1169	anti-parallel
Strand 3	C	1188	1190	anti-parallel
Strand 4	C	1203	1205	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	804	806	first strand
Strand 2	C	938	940	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1220	1223	first strand
Strand 2	C	1178	1182	anti-parallel
Strand 3	C	1172	1174	anti-parallel
Strand 4	C	1231	1233	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XO4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XO4