Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 9XOF entry
There are 8 chains in PDB entry 9XOF
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
SER 6 | SER 99 |
B
|
ASP 5 | GLN 97 |
C
|
SER 4 | GLN 96 |
D
|
SER 6 | SER 99 |
G
|
SER 4 | GLN 96 |
H
|
SER 4 | GLN 96 |
I
|
ASP 5 | GLN 95 |
J
|
ASP 5 | LEU 91 |
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There are 9
helices in PDB entry 9XOF. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 7 |
99 | Right-handed alpha |
| Helix 2 |
AA2 | B
| 6 |
97 | Right-handed alpha |
| Helix 3 |
AA3 | C
| 4 |
6 | Right-handed 310 |
| Helix 4 |
AA4 | C
| 7 |
94 | Right-handed alpha |
| Helix 5 |
AA5 | D
| 7 |
97 | Right-handed alpha |
| Helix 6 |
AA6 | G
| 7 |
94 | Right-handed alpha |
| Helix 7 |
AA7 | H
| 7 |
96 | Right-handed alpha |
| Helix 8 |
AA8 | I
| 7 |
94 | Right-handed alpha |
| Helix 9 |
AA9 | J
| 7 |
90 | Right-handed alpha |
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There are no sheets in PDB entry
9XOF
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il