Analysis of interatomic Contacts of Structural Units in PDB entry:
9XQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XQF entry

There are 2 chains in PDB entry 9XQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28ARG 581
B
 ALA 28ARG 581
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9XQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 33Right-handed 310
Helix 2
AA2
A
34 40Right-handed alpha
Helix 3
AA3
A
44 74Right-handed alpha
Helix 4
AA4
A
77 82Right-handed alpha
Helix 5
AA5
A
83 95Right-handed alpha
Helix 6
AA6
A
105 115Right-handed alpha
Helix 7
AA7
A
119 141Right-handed alpha
Helix 8
AA8
A
142 149Right-handed 310
Helix 9
AA9
A
150 174Right-handed alpha
Helix 10
AB1
A
182 195Right-handed alpha
Helix 11
AB2
A
198 220Right-handed alpha
Helix 12
AB3
A
236 244Right-handed alpha
Helix 13
AB4
A
246 266Right-handed alpha
Helix 14
AB5
A
298 306Right-handed alpha
Helix 15
AB6
A
311 331Right-handed alpha
Helix 16
AB7
A
337 354Right-handed alpha
Helix 17
AB8
A
365 372Right-handed alpha
Helix 18
AB9
A
379 395Right-handed alpha
Helix 19
AC1
A
395 401Right-handed alpha
Helix 20
AC2
A
403 416Right-handed alpha
Helix 21
AC3
A
422 432Right-handed alpha
Helix 22
AC4
A
434 448Right-handed alpha
Helix 23
AC5
A
448 468Right-handed alpha
Helix 24
AC6
A
492 506Right-handed alpha
Helix 25
AC7
A
525 543Right-handed alpha
Helix 26
AC8
A
552 562Right-handed alpha
Helix 27
AC9
A
572 576Right-handed 310
Helix 28
AD1
B
29 33Right-handed 310
Helix 29
AD2
B
43 73Right-handed alpha
Helix 30
AD3
B
77 82Right-handed alpha
Helix 31
AD4
B
83 95Right-handed alpha
Helix 32
AD5
B
105 115Right-handed alpha
Helix 33
AD6
B
119 141Right-handed alpha
Helix 34
AD7
B
142 147Right-handed 310
Helix 35
AD8
B
150 174Right-handed alpha
Helix 36
AD9
B
182 193Right-handed alpha
Helix 37
AE1
B
194 197Right-handed 310
Helix 38
AE2
B
198 221Right-handed alpha
Helix 39
AE3
B
236 246Right-handed alpha
Helix 40
AE4
B
246 266Right-handed alpha
Helix 41
AE5
B
298 306Right-handed alpha
Helix 42
AE6
B
308 330Right-handed alpha
Helix 43
AE7
B
338 354Right-handed alpha
Helix 44
AE8
B
363 372Right-handed alpha
Helix 45
AE9
B
379 395Right-handed alpha
Helix 46
AF1
B
395 401Right-handed alpha
Helix 47
AF2
B
403 416Right-handed alpha
Helix 48
AF3
B
421 429Right-handed alpha
Helix 49
AF4
B
431 433Right-handed 310
Helix 50
AF5
B
434 446Right-handed alpha
Helix 51
AF6
B
448 468Right-handed alpha
Helix 52
AF7
B
493 505Right-handed alpha
Helix 53
AF8
B
525 542Right-handed alpha
Helix 54
AF9
B
552 562Right-handed alpha
Helix 55
AG1
B
572 576Right-handed 310
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There are 4 sheets in PDB entry 9XQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
361 362anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 483first strand
Strand 2
A
514 517parallel
Strand 3
A
546 549parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
361 362anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
481 483first strand
Strand 2
B
514 517parallel
Strand 3
B
546 549parallel
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