Analysis of interatomic Contacts of Structural Units in PDB entry:
9XQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XQL entry

There are 2 chains in PDB entry 9XQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 52HIS 449
B
 ASN 53LYS 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 9XQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 64Right-handed 310
Helix 2
AA2
A
65 80Right-handed alpha
Helix 3
AA3
A
95 105Right-handed alpha
Helix 4
AA4
A
118 125Right-handed alpha
Helix 5
AA5
A
126 128Right-handed 310
Helix 6
AA6
A
136 140Right-handed 310
Helix 7
AA7
A
141 146Right-handed alpha
Helix 8
AA8
A
170 176Right-handed alpha
Helix 9
AA9
A
184 198Right-handed alpha
Helix 10
AB1
A
209 215Right-handed alpha
Helix 11
AB2
A
218 224Right-handed alpha
Helix 12
AB3
A
227 237Right-handed alpha
Helix 13
AB4
A
245 261Right-handed alpha
Helix 14
AB5
A
265 269Right-handed 310
Helix 15
AB6
A
270 280Right-handed alpha
Helix 16
AB7
A
292 300Right-handed alpha
Helix 17
AB8
A
315 320Right-handed alpha
Helix 18
AB9
A
338 352Right-handed alpha
Helix 19
AC1
A
352 362Right-handed alpha
Helix 20
AC2
A
375 380Right-handed alpha
Helix 21
AC3
A
380 392Right-handed alpha
Helix 22
AC4
A
399 403Right-handed 310
Helix 23
AC5
A
406 422Right-handed alpha
Helix 24
AC6
A
426 445Right-handed alpha
Helix 25
AC7
B
62 64Right-handed 310
Helix 26
AC8
B
65 80Right-handed alpha
Helix 27
AC9
B
95 107Right-handed alpha
Helix 28
AD1
B
118 125Right-handed alpha
Helix 29
AD2
B
126 128Right-handed 310
Helix 30
AD3
B
136 140Right-handed 310
Helix 31
AD4
B
141 146Right-handed alpha
Helix 32
AD5
B
170 176Right-handed alpha
Helix 33
AD6
B
184 198Right-handed alpha
Helix 34
AD7
B
209 215Right-handed alpha
Helix 35
AD8
B
218 224Right-handed alpha
Helix 36
AD9
B
227 238Right-handed alpha
Helix 37
AE1
B
245 261Right-handed alpha
Helix 38
AE2
B
265 269Right-handed 310
Helix 39
AE3
B
270 280Right-handed alpha
Helix 40
AE4
B
292 300Right-handed alpha
Helix 41
AE5
B
315 320Right-handed alpha
Helix 42
AE6
B
338 352Right-handed alpha
Helix 43
AE7
B
352 362Right-handed alpha
Helix 44
AE8
B
375 380Right-handed alpha
Helix 45
AE9
B
380 392Right-handed alpha
Helix 46
AF1
B
399 403Right-handed 310
Helix 47
AF2
B
406 422Right-handed alpha
Helix 48
AF3
B
426 442Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 9XQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
83 88parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
329 332anti-parallel
Strand 3
A
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
153 154anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
162 169anti-parallel
Strand 3
A
305 308anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
162 169anti-parallel
Strand 3
A
322 325anti-parallel
Strand 4
A
395 396parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 60first strand
Strand 2
B
83 89parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 115first strand
Strand 2
B
329 332anti-parallel
Strand 3
B
157 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
153 154anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 203first strand
Strand 2
B
283 289parallel
Strand 3
B
162 169anti-parallel
Strand 4
B
305 308anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 203first strand
Strand 2
B
283 289parallel
Strand 3
B
162 169anti-parallel
Strand 4
B
322 325anti-parallel
Strand 5
B
395 396parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il