Analysis of interatomic Contacts of Structural Units in PDB entry:
9XQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XQM entry

There are 2 chains in PDB entry 9XQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 23ASP 745
B
 ALA 1GLN 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9XQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 60Right-handed alpha
Helix 2
AA2
A
85 95Right-handed alpha
Helix 3
AA3
A
328 332Right-handed 310
Helix 4
AA4
A
364 379Right-handed alpha
Helix 5
AA5
A
381 387Right-handed alpha
Helix 6
AA6
A
391 399Right-handed alpha
Helix 7
AA7
A
408 412Right-handed 310
Helix 8
AA8
A
426 438Right-handed alpha
Helix 9
AA9
A
452 469Right-handed alpha
Helix 10
AB1
A
485 498Right-handed alpha
Helix 11
AB2
A
560 567Right-handed alpha
Helix 12
AB3
A
575 582Right-handed alpha
Helix 13
AB4
A
620 628Right-handed alpha
Helix 14
AB5
A
661 666Right-handed alpha
Helix 15
AB6
A
677 694Right-handed alpha
Helix 16
AB7
A
699 721Right-handed alpha
Helix 17
AB8
B
11 15Right-handed 310
Helix 18
AB9
B
19 34Right-handed alpha
Helix 19
AC1
B
40 53Right-handed alpha
Helix 20
AC2
B
56 70Right-handed alpha
Helix 21
AC3
B
78 93Right-handed alpha
Helix 22
AC4
B
94 107Right-handed alpha
Helix 23
AC5
B
113 129Right-handed alpha
Helix 24
AC6
B
130 144Right-handed alpha
Helix 25
AC7
B
147 161Right-handed alpha
Helix 26
AC8
B
163 177Right-handed alpha
Helix 27
AC9
B
180 195Right-handed alpha
Helix 28
AD1
B
197 206Right-handed alpha
Helix 29
AD2
B
222 239Right-handed alpha
Helix 30
AD3
B
246 251Right-handed alpha
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There are 4 sheets in PDB entry 9XQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
356 361anti-parallel
Strand 3
A
319 322anti-parallel
Strand 4
A
308 311anti-parallel
Strand 5
A
64 69anti-parallel
Strand 6
A
99 105parallel
Strand 7
A
248 253parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
640 641parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
414 419anti-parallel
Strand 3
A
670 676anti-parallel
Strand 4
A
652 656anti-parallel
Strand 5
A
645 648anti-parallel
Strand 6
A
441 445anti-parallel
Strand 7
A
474 480parallel
Strand 8
A
597 607parallel
Strand 9
A
636 638anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
414 419anti-parallel
Strand 3
A
670 676anti-parallel
Strand 4
A
652 656anti-parallel
Strand 5
A
645 648anti-parallel
Strand 6
A
441 445anti-parallel
Strand 7
A
474 480parallel
Strand 8
A
597 607parallel
Strand 9
A
728 730anti-parallel
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