Analysis of interatomic Contacts of Structural Units in PDB entry:
9XUH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XUH entry

There is 1 chain in PDB entry 9XUH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 46ASN 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9XUH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
85 89Right-handed 310
Helix 2
AA2
A
103 106Right-handed 310
Helix 3
AA3
A
107 117Right-handed alpha
Helix 4
AA4
A
132 148Right-handed alpha
Helix 5
AA5
A
168 178Right-handed alpha
Helix 6
AA6
A
199 205Right-handed 310
Helix 7
AA7
A
222 227Right-handed alpha
Helix 8
AA8
A
227 234Right-handed alpha
Helix 9
AA9
A
255 257Right-handed 310
Helix 10
AB1
A
258 272Right-handed alpha
Helix 11
AB2
A
273 280Right-handed 310
Helix 12
AB3
A
285 290Right-handed alpha
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There are 2 sheets in PDB entry 9XUH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
67 71first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
120 124anti-parallel
Strand 4
A
91 97parallel
Strand 5
A
157 167parallel
Strand 6
A
185 189parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
210 215first strand
Strand 2
A
238 243parallel
Strand 3
A
293 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il