Analysis of interatomic Contacts of Structural Units in PDB entry:
9XVC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XVC entry

There are 16 chains in PDB entry 9XVC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	GLY 182
D	MET 1	GLY 182
H	MET 1	VAL 264
G	MET 1	VAL 264
F	MET 1	VAL 264
E	MET 1	VAL 264
A	MET 1	GLY 182
B	MET 1	GLY 182
K	MET 1	GLY 182
L	MET 1	GLY 182
P	MET 1	VAL 264
O	MET 1	VAL 264
N	MET 1	VAL 264
M	MET 1	VAL 264
I	MET 1	GLY 182
J	MET 1	GLY 182

There are182 helices in PDB entry 9XVC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	9	20	Right-handed alpha
Helix 2	AA2	C	41	58	Right-handed alpha
Helix 3	AA3	C	72	74	Right-handed 310
Helix 4	AA4	C	80	89	Right-handed alpha
Helix 5	AA5	C	92	97	Right-handed alpha
Helix 6	AA6	C	140	144	Right-handed 310
Helix 7	AA7	C	154	159	Right-handed alpha
Helix 8	AA8	C	161	166	Right-handed alpha
Helix 9	AA9	C	166	180	Right-handed alpha
Helix 10	AB1	D	9	20	Right-handed alpha
Helix 11	AB2	D	41	57	Right-handed alpha
Helix 12	AB3	D	72	74	Right-handed 310
Helix 13	AB4	D	80	89	Right-handed alpha
Helix 14	AB5	D	90	93	Right-handed 310
Helix 15	AB6	D	158	165	Right-handed 310
Helix 16	AB7	D	166	181	Right-handed alpha
Helix 17	AB8	H	2	9	Right-handed alpha
Helix 18	AB9	H	19	24	Right-handed alpha
Helix 19	AC1	H	29	42	Right-handed alpha
Helix 20	AC2	H	55	63	Right-handed alpha
Helix 21	AC3	H	69	80	Right-handed alpha
Helix 22	AC4	H	89	98	Right-handed alpha
Helix 23	AC5	H	110	119	Right-handed alpha
Helix 24	AC6	H	129	135	Right-handed 310
Helix 25	AC7	H	158	164	Right-handed alpha
Helix 26	AC8	H	170	180	Right-handed alpha
Helix 27	AC9	H	194	211	Right-handed alpha
Helix 28	AD1	H	213	217	Right-handed 310
Helix 29	AD2	H	229	238	Right-handed alpha
Helix 30	AD3	H	249	263	Right-handed alpha
Helix 31	AD4	G	2	11	Right-handed alpha
Helix 32	AD5	G	19	24	Right-handed 310
Helix 33	AD6	G	29	42	Right-handed alpha
Helix 34	AD7	G	44	49	Right-handed alpha
Helix 35	AD8	G	53	65	Right-handed alpha
Helix 36	AD9	G	68	79	Right-handed alpha
Helix 37	AE1	G	89	98	Right-handed alpha
Helix 38	AE2	G	110	119	Right-handed alpha
Helix 39	AE3	G	128	135	Right-handed 310
Helix 40	AE4	G	158	167	Right-handed alpha
Helix 41	AE5	G	170	180	Right-handed alpha
Helix 42	AE6	G	194	211	Right-handed alpha
Helix 43	AE7	G	213	217	Right-handed 310
Helix 44	AE8	G	228	238	Right-handed alpha
Helix 45	AE9	G	249	259	Right-handed alpha
Helix 46	AF1	F	2	10	Right-handed alpha
Helix 47	AF2	F	29	42	Right-handed alpha
Helix 48	AF3	F	44	50	Right-handed alpha
Helix 49	AF4	F	55	66	Right-handed alpha
Helix 50	AF5	F	68	80	Right-handed alpha
Helix 51	AF6	F	85	88	Right-handed 310
Helix 52	AF7	F	89	97	Right-handed alpha
Helix 53	AF8	F	110	120	Right-handed alpha
Helix 54	AF9	F	128	133	Right-handed alpha
Helix 55	AG1	F	158	166	Right-handed alpha
Helix 56	AG2	F	170	180	Right-handed alpha
Helix 57	AG3	F	196	211	Right-handed alpha
Helix 58	AG4	F	213	217	Right-handed 310
Helix 59	AG5	F	228	236	Right-handed alpha
Helix 60	AG6	F	249	260	Right-handed alpha
Helix 61	AG7	E	3	11	Right-handed alpha
Helix 62	AG8	E	29	42	Right-handed alpha
Helix 63	AG9	E	44	49	Right-handed alpha
Helix 64	AH1	E	50	52	Right-handed 310
Helix 65	AH2	E	55	64	Right-handed alpha
Helix 66	AH3	E	68	79	Right-handed alpha
Helix 67	AH4	E	85	88	Right-handed 310
Helix 68	AH5	E	89	98	Right-handed alpha
Helix 69	AH6	E	112	119	Right-handed alpha
Helix 70	AH7	E	131	135	Right-handed 310
Helix 71	AH8	E	158	163	Right-handed alpha
Helix 72	AH9	E	170	180	Right-handed alpha
Helix 73	AI1	E	194	211	Right-handed alpha
Helix 74	AI2	E	213	217	Right-handed 310
Helix 75	AI3	E	228	238	Right-handed alpha
Helix 76	AI4	E	249	263	Right-handed alpha
Helix 77	AI5	A	9	20	Right-handed alpha
Helix 78	AI6	A	41	58	Right-handed alpha
Helix 79	AI7	A	81	96	Right-handed alpha
Helix 80	AI8	A	140	144	Right-handed 310
Helix 81	AI9	A	154	159	Right-handed alpha
Helix 82	AJ1	A	161	165	Right-handed 310
Helix 83	AJ2	A	166	182	Right-handed alpha
Helix 84	AJ3	B	9	20	Right-handed alpha
Helix 85	AJ4	B	41	55	Right-handed alpha
Helix 86	AJ5	B	80	89	Right-handed alpha
Helix 87	AJ6	B	89	97	Right-handed alpha
Helix 88	AJ7	B	140	144	Right-handed 310
Helix 89	AJ8	B	160	165	Right-handed 310
Helix 90	AJ9	B	166	182	Right-handed alpha
Helix 91	AK1	K	9	20	Right-handed alpha
Helix 92	AK2	K	41	58	Right-handed alpha
Helix 93	AK3	K	72	74	Right-handed 310
Helix 94	AK4	K	80	89	Right-handed alpha
Helix 95	AK5	K	92	97	Right-handed alpha
Helix 96	AK6	K	140	144	Right-handed 310
Helix 97	AK7	K	154	160	Right-handed 310
Helix 98	AK8	K	161	166	Right-handed alpha
Helix 99	AK9	K	166	180	Right-handed alpha
Helix 100	AL1	L	9	20	Right-handed alpha
Helix 101	AL2	L	41	55	Right-handed alpha
Helix 102	AL3	L	72	74	Right-handed 310
Helix 103	AL4	L	80	89	Right-handed alpha
Helix 104	AL5	L	90	93	Right-handed 310
Helix 105	AL6	L	140	144	Right-handed 310
Helix 106	AL7	L	158	165	Right-handed 310
Helix 107	AL8	L	166	181	Right-handed alpha
Helix 108	AL9	P	2	11	Right-handed alpha
Helix 109	AM1	P	18	24	Right-handed alpha
Helix 110	AM2	P	29	42	Right-handed alpha
Helix 111	AM3	P	44	50	Right-handed alpha
Helix 112	AM4	P	55	63	Right-handed alpha
Helix 113	AM5	P	69	79	Right-handed alpha
Helix 114	AM6	P	89	98	Right-handed alpha
Helix 115	AM7	P	110	119	Right-handed alpha
Helix 116	AM8	P	131	135	Right-handed 310
Helix 117	AM9	P	158	166	Right-handed alpha
Helix 118	AN1	P	170	180	Right-handed alpha
Helix 119	AN2	P	194	211	Right-handed alpha
Helix 120	AN3	P	213	217	Right-handed 310
Helix 121	AN4	P	229	237	Right-handed alpha
Helix 122	AN5	P	249	263	Right-handed alpha
Helix 123	AN6	O	2	11	Right-handed alpha
Helix 124	AN7	O	20	24	Right-handed 310
Helix 125	AN8	O	29	42	Right-handed alpha
Helix 126	AN9	O	44	49	Right-handed alpha
Helix 127	AO1	O	53	66	Right-handed alpha
Helix 128	AO2	O	68	80	Right-handed alpha
Helix 129	AO3	O	85	88	Right-handed 310
Helix 130	AO4	O	89	98	Right-handed alpha
Helix 131	AO5	O	110	119	Right-handed alpha
Helix 132	AO6	O	128	135	Right-handed 310
Helix 133	AO7	O	159	167	Right-handed alpha
Helix 134	AO8	O	170	180	Right-handed alpha
Helix 135	AO9	O	194	211	Right-handed alpha
Helix 136	AP1	O	213	217	Right-handed 310
Helix 137	AP2	O	228	238	Right-handed alpha
Helix 138	AP3	O	249	259	Right-handed alpha
Helix 139	AP4	N	3	11	Right-handed alpha
Helix 140	AP5	N	29	42	Right-handed alpha
Helix 141	AP6	N	44	50	Right-handed alpha
Helix 142	AP7	N	55	66	Right-handed alpha
Helix 143	AP8	N	68	79	Right-handed alpha
Helix 144	AP9	N	85	88	Right-handed 310
Helix 145	AQ1	N	89	97	Right-handed alpha
Helix 146	AQ2	N	110	120	Right-handed alpha
Helix 147	AQ3	N	128	133	Right-handed alpha
Helix 148	AQ4	N	158	166	Right-handed alpha
Helix 149	AQ5	N	170	180	Right-handed alpha
Helix 150	AQ6	N	194	211	Right-handed alpha
Helix 151	AQ7	N	213	217	Right-handed 310
Helix 152	AQ8	N	228	238	Right-handed alpha
Helix 153	AQ9	N	249	260	Right-handed alpha
Helix 154	AR1	M	3	11	Right-handed alpha
Helix 155	AR2	M	21	26	Right-handed alpha
Helix 156	AR3	M	29	42	Right-handed alpha
Helix 157	AR4	M	47	52	Right-handed 310
Helix 158	AR5	M	55	64	Right-handed alpha
Helix 159	AR6	M	68	80	Right-handed alpha
Helix 160	AR7	M	89	98	Right-handed alpha
Helix 161	AR8	M	112	119	Right-handed alpha
Helix 162	AR9	M	131	135	Right-handed 310
Helix 163	AS1	M	158	166	Right-handed alpha
Helix 164	AS2	M	170	180	Right-handed alpha
Helix 165	AS3	M	194	211	Right-handed alpha
Helix 166	AS4	M	213	217	Right-handed 310
Helix 167	AS5	M	228	238	Right-handed alpha
Helix 168	AS6	M	249	258	Right-handed alpha
Helix 169	AS7	I	9	20	Right-handed alpha
Helix 170	AS8	I	41	58	Right-handed alpha
Helix 171	AS9	I	81	98	Right-handed alpha
Helix 172	AT1	I	140	144	Right-handed 310
Helix 173	AT2	I	154	159	Right-handed alpha
Helix 174	AT3	I	160	164	Right-handed 310
Helix 175	AT4	I	166	182	Right-handed alpha
Helix 176	AT5	J	9	20	Right-handed alpha
Helix 177	AT6	J	41	58	Right-handed alpha
Helix 178	AT7	J	80	89	Right-handed alpha
Helix 179	AT8	J	140	144	Right-handed 310
Helix 180	AT9	J	154	159	Right-handed 310
Helix 181	AU1	J	161	165	Right-handed 310
Helix 182	AU2	J	166	182	Right-handed alpha

There are 20 sheets in PDB entry 9XVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	31	first strand
Strand 2	C	2	7	parallel
Strand 3	C	61	70	parallel
Strand 4	C	104	114	anti-parallel
Strand 5	C	119	130	anti-parallel
Strand 6	C	146	148	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	30	first strand
Strand 2	D	2	6	parallel
Strand 3	D	61	70	parallel
Strand 4	D	105	114	anti-parallel
Strand 5	D	119	130	anti-parallel
Strand 6	D	146	148	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	123	126	first strand
Strand 2	H	140	144	parallel
Strand 3	H	102	105	parallel
Strand 4	H	13	17	parallel
Strand 5	H	184	188	parallel
Strand 6	H	220	223	parallel
Strand 7	H	240	243	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	144	first strand
Strand 2	G	102	105	parallel
Strand 3	G	13	17	parallel
Strand 4	G	184	188	parallel
Strand 5	G	220	223	parallel
Strand 6	G	240	243	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	126	first strand
Strand 2	F	140	144	parallel
Strand 3	F	102	105	parallel
Strand 4	F	13	17	parallel
Strand 5	F	184	188	parallel
Strand 6	F	220	223	parallel
Strand 7	F	240	242	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	126	first strand
Strand 2	E	141	144	parallel
Strand 3	E	102	105	parallel
Strand 4	E	13	17	parallel
Strand 5	E	184	188	parallel
Strand 6	E	220	223	parallel
Strand 7	E	240	242	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	30	first strand
Strand 2	A	2	6	parallel
Strand 3	A	61	68	parallel
Strand 4	A	105	114	anti-parallel
Strand 5	A	119	130	anti-parallel
Strand 6	A	146	147	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	31	first strand
Strand 2	B	2	7	parallel
Strand 3	B	61	70	parallel
Strand 4	B	104	114	anti-parallel
Strand 5	B	119	122	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	31	first strand
Strand 2	B	2	7	parallel
Strand 3	B	61	70	parallel
Strand 4	B	104	114	anti-parallel
Strand 5	B	125	130	anti-parallel
Strand 6	B	146	148	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	2	7	first strand
Strand 2	K	26	31	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	61	70	first strand
Strand 2	K	104	114	anti-parallel
Strand 3	K	119	130	anti-parallel
Strand 4	K	146	148	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	31	first strand
Strand 2	L	2	7	parallel
Strand 3	L	61	70	parallel
Strand 4	L	105	114	anti-parallel
Strand 5	L	119	122	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	31	first strand
Strand 2	L	2	7	parallel
Strand 3	L	61	70	parallel
Strand 4	L	105	114	anti-parallel
Strand 5	L	125	130	anti-parallel
Strand 6	L	146	148	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	123	126	first strand
Strand 2	P	140	144	parallel
Strand 3	P	102	105	parallel
Strand 4	P	13	17	parallel
Strand 5	P	184	188	parallel
Strand 6	P	220	223	parallel
Strand 7	P	240	242	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	123	126	first strand
Strand 2	O	140	144	parallel
Strand 3	O	102	105	parallel
Strand 4	O	13	17	parallel
Strand 5	O	184	188	parallel
Strand 6	O	220	223	parallel
Strand 7	O	240	241	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	123	126	first strand
Strand 2	N	140	144	parallel
Strand 3	N	102	105	parallel
Strand 4	N	13	17	parallel
Strand 5	N	184	188	parallel
Strand 6	N	220	223	parallel
Strand 7	N	240	242	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	123	126	first strand
Strand 2	M	140	144	parallel
Strand 3	M	102	105	parallel
Strand 4	M	13	17	parallel
Strand 5	M	184	188	parallel
Strand 6	M	220	223	parallel
Strand 7	M	240	243	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	31	first strand
Strand 2	I	2	7	parallel
Strand 3	I	61	68	parallel
Strand 4	I	104	114	anti-parallel
Strand 5	I	119	122	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	31	first strand
Strand 2	I	2	7	parallel
Strand 3	I	61	68	parallel
Strand 4	I	104	114	anti-parallel
Strand 5	I	125	130	anti-parallel
Strand 6	I	146	148	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	26	31	first strand
Strand 2	J	2	7	parallel
Strand 3	J	61	70	parallel
Strand 4	J	104	114	anti-parallel
Strand 5	J	119	130	anti-parallel
Strand 6	J	146	148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XVC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XVC