Analysis of interatomic Contacts of Structural Units in PDB entry:
9XVG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XVG entry

There are 2 chains in PDB entry 9XVG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 25	LYS 738
B	PHE 25	LYS 738

There are 42 helices in PDB entry 9XVG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	67	Right-handed alpha
Helix 2	AA2	A	110	113	Right-handed 310
Helix 3	AA3	A	181	187	Right-handed alpha
Helix 4	AA4	A	188	192	Right-handed 310
Helix 5	AA5	A	198	205	Right-handed alpha
Helix 6	AA6	A	205	213	Right-handed alpha
Helix 7	AA7	A	257	260	Right-handed 310
Helix 8	AA8	A	269	285	Right-handed alpha
Helix 9	AA9	A	310	319	Right-handed alpha
Helix 10	AB1	A	341	359	Right-handed alpha
Helix 11	AB2	A	406	411	Right-handed alpha
Helix 12	AB3	A	446	458	Right-handed alpha
Helix 13	AB4	A	464	472	Right-handed alpha
Helix 14	AB5	A	483	485	Right-handed 310
Helix 15	AB6	A	498	503	Right-handed alpha
Helix 16	AB7	A	537	556	Right-handed alpha
Helix 17	AB8	A	585	589	Right-handed 310
Helix 18	AB9	A	591	598	Right-handed alpha
Helix 19	AC1	A	602	616	Right-handed alpha
Helix 20	AC2	A	705	712	Right-handed alpha
Helix 21	AC3	A	713	719	Right-handed alpha
Helix 22	AC4	B	62	67	Right-handed alpha
Helix 23	AC5	B	110	113	Right-handed 310
Helix 24	AC6	B	181	186	Right-handed alpha
Helix 25	AC7	B	187	192	Right-handed 310
Helix 26	AC8	B	198	203	Right-handed alpha
Helix 27	AC9	B	205	213	Right-handed alpha
Helix 28	AD1	B	256	260	Right-handed 310
Helix 29	AD2	B	269	285	Right-handed alpha
Helix 30	AD3	B	310	319	Right-handed alpha
Helix 31	AD4	B	341	359	Right-handed alpha
Helix 32	AD5	B	406	411	Right-handed alpha
Helix 33	AD6	B	446	458	Right-handed alpha
Helix 34	AD7	B	463	472	Right-handed alpha
Helix 35	AD8	B	483	485	Right-handed 310
Helix 36	AD9	B	498	503	Right-handed alpha
Helix 37	AE1	B	537	557	Right-handed alpha
Helix 38	AE2	B	585	589	Right-handed 310
Helix 39	AE3	B	591	598	Right-handed alpha
Helix 40	AE4	B	602	616	Right-handed alpha
Helix 41	AE5	B	705	712	Right-handed alpha
Helix 42	AE6	B	713	718	Right-handed alpha

There are 13 sheets in PDB entry 9XVG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	86	91	anti-parallel
Strand 3	A	42	48	anti-parallel
Strand 4	A	37	39	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	54	61	anti-parallel
Strand 3	A	98	105	anti-parallel
Strand 4	A	150	152	anti-parallel
Strand 5	A	130	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	114	115	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	442	445	parallel
Strand 3	A	419	422	parallel
Strand 4	A	363	366	parallel
Strand 5	A	288	293	parallel
Strand 6	A	216	219	parallel
Strand 7	A	177	180	parallel
Strand 8	A	563	565	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	249	255	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	633	first strand
Strand 2	A	648	654	anti-parallel
Strand 3	A	660	666	anti-parallel
Strand 4	A	728	736	anti-parallel
Strand 5	A	682	689	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	721	724	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	86	91	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	37	38	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	76	first strand
Strand 2	B	54	61	anti-parallel
Strand 3	B	98	105	anti-parallel
Strand 4	B	150	152	anti-parallel
Strand 5	B	130	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	114	115	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	180	first strand
Strand 2	B	216	219	parallel
Strand 3	B	288	292	parallel
Strand 4	B	363	366	parallel
Strand 5	B	419	422	parallel
Strand 6	B	443	445	parallel
Strand 7	B	487	489	parallel
Strand 8	B	561	565	parallel
Strand 9	B	177	180	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	633	first strand
Strand 2	B	648	654	anti-parallel
Strand 3	B	660	666	anti-parallel
Strand 4	B	728	736	anti-parallel
Strand 5	B	682	689	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	675	first strand
Strand 2	B	721	724	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XVG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XVG