Analysis of interatomic Contacts of Structural Units in PDB entry:
9XVI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XVI entry

There are 4 chains in PDB entry 9XVI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 21	LYS 738
C	LYS 23	ASN 809
B	SER 21	LYS 738
D	LYS 23	ASN 809

There are 76 helices in PDB entry 9XVI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	66	Right-handed alpha
Helix 2	AA2	A	110	113	Right-handed 310
Helix 3	AA3	A	181	186	Right-handed alpha
Helix 4	AA4	A	188	192	Right-handed 310
Helix 5	AA5	A	198	205	Right-handed alpha
Helix 6	AA6	A	205	213	Right-handed alpha
Helix 7	AA7	A	269	285	Right-handed alpha
Helix 8	AA8	A	314	319	Right-handed alpha
Helix 9	AA9	A	343	358	Right-handed alpha
Helix 10	AB1	A	368	374	Right-handed 310
Helix 11	AB2	A	376	379	Right-handed 310
Helix 12	AB3	A	380	386	Right-handed alpha
Helix 13	AB4	A	403	411	Right-handed alpha
Helix 14	AB5	A	446	458	Right-handed alpha
Helix 15	AB6	A	463	472	Right-handed alpha
Helix 16	AB7	A	483	485	Right-handed 310
Helix 17	AB8	A	498	503	Right-handed alpha
Helix 18	AB9	A	537	556	Right-handed alpha
Helix 19	AC1	A	585	589	Right-handed 310
Helix 20	AC2	A	591	598	Right-handed alpha
Helix 21	AC3	A	602	616	Right-handed alpha
Helix 22	AC4	A	705	712	Right-handed alpha
Helix 23	AC5	A	716	719	Right-handed 310
Helix 24	AC6	C	290	294	Right-handed 310
Helix 25	AC7	C	307	311	Right-handed 310
Helix 26	AC8	C	320	326	Right-handed alpha
Helix 27	AC9	C	327	334	Right-handed alpha
Helix 28	AD1	C	362	366	Right-handed 310
Helix 29	AD2	C	373	388	Right-handed alpha
Helix 30	AD3	C	421	426	Right-handed alpha
Helix 31	AD4	C	434	453	Right-handed alpha
Helix 32	AD5	C	462	467	Right-handed 310
Helix 33	AD6	C	477	485	Right-handed alpha
Helix 34	AD7	C	523	533	Right-handed alpha
Helix 35	AD8	C	573	579	Right-handed alpha
Helix 36	AD9	C	606	621	Right-handed alpha
Helix 37	AE1	C	642	646	Right-handed 310
Helix 38	AE2	C	656	676	Right-handed alpha
Helix 39	AE3	B	62	66	Right-handed alpha
Helix 40	AE4	B	110	113	Right-handed 310
Helix 41	AE5	B	181	186	Right-handed alpha
Helix 42	AE6	B	188	192	Right-handed 310
Helix 43	AE7	B	198	205	Right-handed alpha
Helix 44	AE8	B	205	213	Right-handed alpha
Helix 45	AE9	B	269	285	Right-handed alpha
Helix 46	AF1	B	314	319	Right-handed alpha
Helix 47	AF2	B	343	359	Right-handed alpha
Helix 48	AF3	B	368	374	Right-handed 310
Helix 49	AF4	B	376	379	Right-handed 310
Helix 50	AF5	B	380	386	Right-handed alpha
Helix 51	AF6	B	403	411	Right-handed alpha
Helix 52	AF7	B	446	458	Right-handed alpha
Helix 53	AF8	B	463	472	Right-handed alpha
Helix 54	AF9	B	483	485	Right-handed 310
Helix 55	AG1	B	498	503	Right-handed alpha
Helix 56	AG2	B	537	556	Right-handed alpha
Helix 57	AG3	B	585	589	Right-handed 310
Helix 58	AG4	B	593	598	Right-handed alpha
Helix 59	AG5	B	602	616	Right-handed alpha
Helix 60	AG6	B	705	712	Right-handed alpha
Helix 61	AG7	B	716	719	Right-handed 310
Helix 62	AG8	D	290	294	Right-handed 310
Helix 63	AG9	D	307	311	Right-handed 310
Helix 64	AH1	D	320	326	Right-handed alpha
Helix 65	AH2	D	327	334	Right-handed alpha
Helix 66	AH3	D	362	366	Right-handed 310
Helix 67	AH4	D	375	388	Right-handed alpha
Helix 68	AH5	D	421	426	Right-handed alpha
Helix 69	AH6	D	434	453	Right-handed alpha
Helix 70	AH7	D	461	467	Right-handed 310
Helix 71	AH8	D	477	485	Right-handed alpha
Helix 72	AH9	D	523	533	Right-handed alpha
Helix 73	AI1	D	573	579	Right-handed alpha
Helix 74	AI2	D	606	621	Right-handed alpha
Helix 75	AI3	D	642	646	Right-handed 310
Helix 76	AI4	D	656	676	Right-handed alpha

There are 34 sheets in PDB entry 9XVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	86	92	anti-parallel
Strand 3	A	43	48	anti-parallel
Strand 4	A	37	38	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	54	61	anti-parallel
Strand 3	A	98	105	anti-parallel
Strand 4	A	151	152	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	114	115	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	216	219	parallel
Strand 3	A	288	293	parallel
Strand 4	A	363	366	parallel
Strand 5	A	419	422	parallel
Strand 6	A	443	445	parallel
Strand 7	A	487	489	parallel
Strand 8	A	561	565	parallel
Strand 9	A	177	180	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	251	255	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	633	first strand
Strand 2	A	648	654	anti-parallel
Strand 3	A	660	666	anti-parallel
Strand 4	A	728	736	anti-parallel
Strand 5	A	682	689	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	721	724	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	31	first strand
Strand 2	C	37	43	anti-parallel
Strand 3	C	50	56	anti-parallel
Strand 4	C	111	112	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	31	first strand
Strand 2	C	37	43	anti-parallel
Strand 3	C	50	56	anti-parallel
Strand 4	C	115	116	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	68	75	anti-parallel
Strand 3	C	124	132	anti-parallel
Strand 4	C	141	143	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	68	75	anti-parallel
Strand 3	C	124	132	anti-parallel
Strand 4	C	151	155	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	181	first strand
Strand 2	C	217	222	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	206	first strand
Strand 2	C	187	190	anti-parallel
Strand 3	C	233	236	anti-parallel
Strand 4	C	252	253	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	269	272	anti-parallel
Strand 3	C	261	263	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	299	first strand
Strand 2	C	337	340	parallel
Strand 3	C	391	396	parallel
Strand 4	C	456	460	parallel
Strand 5	C	493	497	parallel
Strand 6	C	518	520	parallel
Strand 7	C	561	563	parallel
Strand 8	C	624	628	parallel
Strand 9	C	296	299	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	692	694	first strand
Strand 2	C	711	715	anti-parallel
Strand 3	C	738	743	anti-parallel
Strand 4	C	801	806	anti-parallel
Strand 5	C	763	767	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	794	797	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	86	92	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	37	38	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	76	first strand
Strand 2	B	54	61	anti-parallel
Strand 3	B	98	105	anti-parallel
Strand 4	B	151	152	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	114	115	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	180	first strand
Strand 2	B	216	219	parallel
Strand 3	B	288	293	parallel
Strand 4	B	363	366	parallel
Strand 5	B	419	422	parallel
Strand 6	B	443	445	parallel
Strand 7	B	487	489	parallel
Strand 8	B	561	565	parallel
Strand 9	B	177	180	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	251	255	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	633	first strand
Strand 2	B	648	654	anti-parallel
Strand 3	B	660	666	anti-parallel
Strand 4	B	728	736	anti-parallel
Strand 5	B	682	689	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	675	first strand
Strand 2	B	721	724	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	31	first strand
Strand 2	D	37	43	anti-parallel
Strand 3	D	50	56	anti-parallel
Strand 4	D	111	112	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	31	first strand
Strand 2	D	37	43	anti-parallel
Strand 3	D	50	56	anti-parallel
Strand 4	D	115	116	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	102	first strand
Strand 2	D	68	75	anti-parallel
Strand 3	D	124	132	anti-parallel
Strand 4	D	141	143	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	102	first strand
Strand 2	D	68	75	anti-parallel
Strand 3	D	124	132	anti-parallel
Strand 4	D	151	155	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	181	first strand
Strand 2	D	217	222	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	206	first strand
Strand 2	D	187	190	anti-parallel
Strand 3	D	233	236	anti-parallel
Strand 4	D	252	253	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	231	first strand
Strand 2	D	269	272	anti-parallel
Strand 3	D	261	263	anti-parallel

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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	299	first strand
Strand 2	D	337	340	parallel
Strand 3	D	391	396	parallel
Strand 4	D	456	459	parallel
Strand 5	D	493	496	parallel
Strand 6	D	518	520	parallel
Strand 7	D	561	563	parallel
Strand 8	D	624	627	parallel
Strand 9	D	296	299	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	692	694	first strand
Strand 2	D	711	715	anti-parallel
Strand 3	D	738	743	anti-parallel
Strand 4	D	801	806	anti-parallel
Strand 5	D	763	767	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	749	752	first strand
Strand 2	D	794	797	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XVI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XVI