Analysis of interatomic Contacts of Structural Units in PDB entry:
9XVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XVP entry

There are 3 chains in PDB entry 9XVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	LYS 23	ASN 809
A	SER 21	LYS 738
B	PHE 34	LYS 738

There are 54 helices in PDB entry 9XVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	290	294	Right-handed 310
Helix 2	AA2	C	307	311	Right-handed 310
Helix 3	AA3	C	319	326	Right-handed alpha
Helix 4	AA4	C	327	334	Right-handed alpha
Helix 5	AA5	C	372	388	Right-handed alpha
Helix 6	AA6	C	421	426	Right-handed alpha
Helix 7	AA7	C	434	452	Right-handed alpha
Helix 8	AA8	C	461	467	Right-handed 310
Helix 9	AA9	C	477	485	Right-handed alpha
Helix 10	AB1	C	523	533	Right-handed alpha
Helix 11	AB2	C	541	546	Right-handed alpha
Helix 12	AB3	C	572	577	Right-handed alpha
Helix 13	AB4	C	606	621	Right-handed alpha
Helix 14	AB5	C	642	646	Right-handed 310
Helix 15	AB6	C	652	655	Right-handed 310
Helix 16	AB7	C	656	673	Right-handed alpha
Helix 17	AB8	A	62	66	Right-handed alpha
Helix 18	AB9	A	110	113	Right-handed 310
Helix 19	AC1	A	181	186	Right-handed alpha
Helix 20	AC2	A	188	192	Right-handed 310
Helix 21	AC3	A	198	205	Right-handed alpha
Helix 22	AC4	A	205	213	Right-handed alpha
Helix 23	AC5	A	269	285	Right-handed alpha
Helix 24	AC6	A	310	319	Right-handed alpha
Helix 25	AC7	A	343	360	Right-handed alpha
Helix 26	AC8	A	368	374	Right-handed 310
Helix 27	AC9	A	376	379	Right-handed 310
Helix 28	AD1	A	380	386	Right-handed alpha
Helix 29	AD2	A	403	411	Right-handed alpha
Helix 30	AD3	A	446	458	Right-handed alpha
Helix 31	AD4	A	463	471	Right-handed alpha
Helix 32	AD5	A	483	485	Right-handed 310
Helix 33	AD6	A	501	505	Right-handed 310
Helix 34	AD7	A	537	556	Right-handed alpha
Helix 35	AD8	A	585	589	Right-handed 310
Helix 36	AD9	A	595	599	Right-handed 310
Helix 37	AE1	A	602	616	Right-handed alpha
Helix 38	AE2	A	705	712	Right-handed alpha
Helix 39	AE3	B	61	67	Right-handed alpha
Helix 40	AE4	B	188	192	Right-handed 310
Helix 41	AE5	B	198	205	Right-handed alpha
Helix 42	AE6	B	205	213	Right-handed alpha
Helix 43	AE7	B	271	284	Right-handed alpha
Helix 44	AE8	B	345	358	Right-handed alpha
Helix 45	AE9	B	446	459	Right-handed alpha
Helix 46	AF1	B	463	473	Right-handed alpha
Helix 47	AF2	B	483	485	Right-handed 310
Helix 48	AF3	B	500	504	Right-handed 310
Helix 49	AF4	B	537	558	Right-handed alpha
Helix 50	AF5	B	579	583	Right-handed 310
Helix 51	AF6	B	585	589	Right-handed 310
Helix 52	AF7	B	591	598	Right-handed alpha
Helix 53	AF8	B	602	616	Right-handed alpha
Helix 54	AF9	B	705	719	Right-handed alpha

There are 23 sheets in PDB entry 9XVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	31	first strand
Strand 2	C	37	43	anti-parallel
Strand 3	C	50	56	anti-parallel
Strand 4	C	111	112	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	68	75	anti-parallel
Strand 3	C	124	132	anti-parallel
Strand 4	C	141	143	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	68	75	anti-parallel
Strand 3	C	124	132	anti-parallel
Strand 4	C	151	155	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	217	220	anti-parallel
Strand 3	C	213	214	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	206	first strand
Strand 2	C	187	190	anti-parallel
Strand 3	C	233	236	anti-parallel
Strand 4	C	252	253	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	269	272	anti-parallel
Strand 3	C	261	263	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	299	first strand
Strand 2	C	337	340	parallel
Strand 3	C	391	396	parallel
Strand 4	C	456	459	parallel
Strand 5	C	493	496	parallel
Strand 6	C	518	520	parallel
Strand 7	C	561	563	parallel
Strand 8	C	624	627	parallel
Strand 9	C	296	299	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	692	694	first strand
Strand 2	C	711	715	anti-parallel
Strand 3	C	738	743	anti-parallel
Strand 4	C	801	806	anti-parallel
Strand 5	C	763	767	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	794	797	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	86	92	anti-parallel
Strand 3	A	43	48	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	52	61	anti-parallel
Strand 3	A	98	106	anti-parallel
Strand 4	A	151	152	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	114	115	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	216	219	parallel
Strand 3	A	288	293	parallel
Strand 4	A	363	366	parallel
Strand 5	A	419	422	parallel
Strand 6	A	443	445	parallel
Strand 7	A	487	489	parallel
Strand 8	A	561	565	parallel
Strand 9	A	177	180	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	633	first strand
Strand 2	A	648	653	anti-parallel
Strand 3	A	661	666	anti-parallel
Strand 4	A	728	736	anti-parallel
Strand 5	A	682	689	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	721	724	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	43	46	anti-parallel
Strand 3	B	90	91	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	73	75	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	150	152	anti-parallel
Strand 3	B	130	131	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	561	565	parallel
Strand 3	B	487	490	parallel
Strand 4	B	443	445	parallel
Strand 5	B	419	422	parallel
Strand 6	B	363	366	parallel
Strand 7	B	288	292	parallel
Strand 8	B	216	219	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	249	255	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	239	240	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	633	first strand
Strand 2	B	648	654	anti-parallel
Strand 3	B	660	666	anti-parallel
Strand 4	B	728	736	anti-parallel
Strand 5	B	682	689	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	675	first strand
Strand 2	B	721	724	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XVP