Analysis of interatomic Contacts of Structural Units in PDB entry:
9XVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XVV entry

There are 3 chains in PDB entry 9XVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 22	LYS 738
C	LYS 23	ASN 809
B	PHE 34	LYS 738

There are 53 helices in PDB entry 9XVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	67	Right-handed alpha
Helix 2	AA2	A	198	204	Right-handed alpha
Helix 3	AA3	A	205	213	Right-handed alpha
Helix 4	AA4	A	257	260	Right-handed 310
Helix 5	AA5	A	269	284	Right-handed alpha
Helix 6	AA6	A	310	319	Right-handed alpha
Helix 7	AA7	A	341	360	Right-handed alpha
Helix 8	AA8	A	368	374	Right-handed 310
Helix 9	AA9	A	376	379	Right-handed 310
Helix 10	AB1	A	380	385	Right-handed alpha
Helix 11	AB2	A	403	411	Right-handed alpha
Helix 12	AB3	A	446	458	Right-handed alpha
Helix 13	AB4	A	463	472	Right-handed alpha
Helix 14	AB5	A	483	485	Right-handed 310
Helix 15	AB6	A	500	504	Right-handed 310
Helix 16	AB7	A	537	557	Right-handed alpha
Helix 17	AB8	A	585	589	Right-handed 310
Helix 18	AB9	A	591	597	Right-handed alpha
Helix 19	AC1	A	602	616	Right-handed alpha
Helix 20	AC2	A	705	711	Right-handed alpha
Helix 21	AC3	A	713	718	Right-handed alpha
Helix 22	AC4	C	290	294	Right-handed 310
Helix 23	AC5	C	307	311	Right-handed 310
Helix 24	AC6	C	320	326	Right-handed alpha
Helix 25	AC7	C	327	332	Right-handed alpha
Helix 26	AC8	C	372	388	Right-handed alpha
Helix 27	AC9	C	421	427	Right-handed alpha
Helix 28	AD1	C	434	453	Right-handed alpha
Helix 29	AD2	C	461	467	Right-handed 310
Helix 30	AD3	C	477	485	Right-handed alpha
Helix 31	AD4	C	522	533	Right-handed alpha
Helix 32	AD5	C	539	546	Right-handed alpha
Helix 33	AD6	C	572	577	Right-handed alpha
Helix 34	AD7	C	606	621	Right-handed alpha
Helix 35	AD8	C	642	646	Right-handed 310
Helix 36	AD9	C	656	676	Right-handed alpha
Helix 37	AE1	B	61	67	Right-handed alpha
Helix 38	AE2	B	181	186	Right-handed alpha
Helix 39	AE3	B	188	192	Right-handed 310
Helix 40	AE4	B	198	205	Right-handed alpha
Helix 41	AE5	B	205	211	Right-handed alpha
Helix 42	AE6	B	271	285	Right-handed alpha
Helix 43	AE7	B	345	358	Right-handed alpha
Helix 44	AE8	B	408	412	Right-handed alpha
Helix 45	AE9	B	446	459	Right-handed alpha
Helix 46	AF1	B	463	473	Right-handed alpha
Helix 47	AF2	B	483	485	Right-handed 310
Helix 48	AF3	B	537	558	Right-handed alpha
Helix 49	AF4	B	579	583	Right-handed 310
Helix 50	AF5	B	585	589	Right-handed 310
Helix 51	AF6	B	591	598	Right-handed alpha
Helix 52	AF7	B	602	616	Right-handed alpha
Helix 53	AF8	B	705	719	Right-handed alpha

There are 25 sheets in PDB entry 9XVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	86	92	anti-parallel
Strand 3	A	42	48	anti-parallel
Strand 4	A	37	38	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	52	61	anti-parallel
Strand 3	A	98	106	anti-parallel
Strand 4	A	150	152	anti-parallel
Strand 5	A	130	131	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	114	115	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	216	219	parallel
Strand 3	A	288	293	parallel
Strand 4	A	363	366	parallel
Strand 5	A	419	422	parallel
Strand 6	A	443	445	parallel
Strand 7	A	487	490	parallel
Strand 8	A	561	565	parallel
Strand 9	A	177	180	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	251	255	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	633	first strand
Strand 2	A	649	654	anti-parallel
Strand 3	A	660	666	anti-parallel
Strand 4	A	728	736	anti-parallel
Strand 5	A	682	689	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	721	724	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	31	first strand
Strand 2	C	37	43	anti-parallel
Strand 3	C	50	56	anti-parallel
Strand 4	C	110	112	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	31	first strand
Strand 2	C	37	43	anti-parallel
Strand 3	C	50	56	anti-parallel
Strand 4	C	115	116	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	67	75	anti-parallel
Strand 3	C	124	133	anti-parallel
Strand 4	C	141	143	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	102	first strand
Strand 2	C	67	75	anti-parallel
Strand 3	C	124	133	anti-parallel
Strand 4	C	151	155	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	175	181	anti-parallel
Strand 3	C	217	223	anti-parallel
Strand 4	C	213	214	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	206	first strand
Strand 2	C	187	190	anti-parallel
Strand 3	C	233	236	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	269	272	anti-parallel
Strand 3	C	261	263	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	299	first strand
Strand 2	C	337	340	parallel
Strand 3	C	391	396	parallel
Strand 4	C	456	459	parallel
Strand 5	C	493	496	parallel
Strand 6	C	518	521	parallel
Strand 7	C	561	563	parallel
Strand 8	C	624	628	parallel
Strand 9	C	296	299	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	691	694	first strand
Strand 2	C	710	715	anti-parallel
Strand 3	C	738	743	anti-parallel
Strand 4	C	801	808	anti-parallel
Strand 5	C	761	767	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	794	797	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	43	46	anti-parallel
Strand 3	B	90	91	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	73	75	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	150	152	anti-parallel
Strand 3	B	130	131	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	180	first strand
Strand 2	B	216	219	parallel
Strand 3	B	288	292	parallel
Strand 4	B	363	366	parallel
Strand 5	B	419	422	parallel
Strand 6	B	443	445	parallel
Strand 7	B	487	489	parallel
Strand 8	B	561	565	parallel
Strand 9	B	177	180	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	249	255	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	239	241	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	633	first strand
Strand 2	B	648	654	anti-parallel
Strand 3	B	660	666	anti-parallel
Strand 4	B	728	736	anti-parallel
Strand 5	B	682	689	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	675	first strand
Strand 2	B	721	724	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XVV