Analysis of interatomic Contacts of Structural Units in PDB entry:
9XWA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XWA entry

There are 4 chains in PDB entry 9XWA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 60	GLN 960
D	THR 370	LYS 574
B	ASP 60	GLN 960
C	THR 370	LYS 574

There are 92 helices in PDB entry 9XWA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	67	Right-handed 310
Helix 2	AA2	A	207	211	Right-handed 310
Helix 3	AA3	A	269	271	Right-handed 310
Helix 4	AA4	A	296	301	Right-handed alpha
Helix 5	AA5	A	305	324	Right-handed alpha
Helix 6	AA6	A	355	359	Right-handed alpha
Helix 7	AA7	A	366	387	Right-handed alpha
Helix 8	AA8	A	394	397	Right-handed 310
Helix 9	AA9	A	398	403	Right-handed alpha
Helix 10	AB1	A	403	417	Right-handed alpha
Helix 11	AB2	A	424	439	Right-handed alpha
Helix 12	AB3	A	449	453	Right-handed 310
Helix 13	AB4	A	455	460	Right-handed alpha
Helix 14	AB5	A	464	482	Right-handed alpha
Helix 15	AB6	A	483	498	Right-handed alpha
Helix 16	AB7	A	504	519	Right-handed alpha
Helix 17	AB8	A	527	537	Right-handed alpha
Helix 18	AB9	A	570	574	Right-handed 310
Helix 19	AC1	A	603	606	Right-handed 310
Helix 20	AC2	A	616	620	Right-handed 310
Helix 21	AC3	A	628	642	Right-handed alpha
Helix 22	AC4	A	647	664	Right-handed alpha
Helix 23	AC5	A	668	676	Right-handed alpha
Helix 24	AC6	A	677	681	Right-handed 310
Helix 25	AC7	A	685	703	Right-handed alpha
Helix 26	AC8	A	707	731	Right-handed alpha
Helix 27	AC9	A	739	756	Right-handed alpha
Helix 28	AD1	A	758	775	Right-handed alpha
Helix 29	AD2	A	785	797	Right-handed alpha
Helix 30	AD3	A	798	812	Right-handed alpha
Helix 31	AD4	A	814	826	Right-handed alpha
Helix 32	AD5	A	830	841	Right-handed alpha
Helix 33	AD6	A	851	860	Right-handed alpha
Helix 34	AD7	A	865	876	Right-handed alpha
Helix 35	AD8	A	876	881	Right-handed alpha
Helix 36	AD9	A	888	890	Right-handed 310
Helix 37	AE1	A	891	899	Right-handed alpha
Helix 38	AE2	A	904	918	Right-handed alpha
Helix 39	AE3	A	923	925	Right-handed 310
Helix 40	AE4	A	926	959	Right-handed alpha
Helix 41	AE5	D	374	379	Right-handed 310
Helix 42	AE6	D	399	407	Right-handed alpha
Helix 43	AE7	D	418	424	Right-handed alpha
Helix 44	AE8	D	438	446	Right-handed 310
Helix 45	AE9	D	450	457	Right-handed alpha
Helix 46	AF1	D	512	522	Right-handed alpha
Helix 47	AF2	B	63	67	Right-handed 310
Helix 48	AF3	B	207	211	Right-handed 310
Helix 49	AF4	B	269	271	Right-handed 310
Helix 50	AF5	B	296	301	Right-handed alpha
Helix 51	AF6	B	305	324	Right-handed alpha
Helix 52	AF7	B	355	359	Right-handed alpha
Helix 53	AF8	B	366	387	Right-handed alpha
Helix 54	AF9	B	394	397	Right-handed 310
Helix 55	AG1	B	398	403	Right-handed alpha
Helix 56	AG2	B	403	417	Right-handed alpha
Helix 57	AG3	B	424	439	Right-handed alpha
Helix 58	AG4	B	449	453	Right-handed 310
Helix 59	AG5	B	455	460	Right-handed alpha
Helix 60	AG6	B	464	482	Right-handed alpha
Helix 61	AG7	B	483	498	Right-handed alpha
Helix 62	AG8	B	504	519	Right-handed alpha
Helix 63	AG9	B	527	537	Right-handed alpha
Helix 64	AH1	B	570	574	Right-handed 310
Helix 65	AH2	B	603	606	Right-handed 310
Helix 66	AH3	B	616	620	Right-handed 310
Helix 67	AH4	B	628	642	Right-handed alpha
Helix 68	AH5	B	647	664	Right-handed alpha
Helix 69	AH6	B	668	676	Right-handed alpha
Helix 70	AH7	B	677	681	Right-handed 310
Helix 71	AH8	B	685	703	Right-handed alpha
Helix 72	AH9	B	707	731	Right-handed alpha
Helix 73	AI1	B	739	756	Right-handed alpha
Helix 74	AI2	B	758	775	Right-handed alpha
Helix 75	AI3	B	785	797	Right-handed alpha
Helix 76	AI4	B	798	812	Right-handed alpha
Helix 77	AI5	B	814	826	Right-handed alpha
Helix 78	AI6	B	830	841	Right-handed alpha
Helix 79	AI7	B	851	860	Right-handed alpha
Helix 80	AI8	B	865	876	Right-handed alpha
Helix 81	AI9	B	876	881	Right-handed alpha
Helix 82	AJ1	B	888	890	Right-handed 310
Helix 83	AJ2	B	891	899	Right-handed alpha
Helix 84	AJ3	B	904	918	Right-handed alpha
Helix 85	AJ4	B	923	925	Right-handed 310
Helix 86	AJ5	B	926	959	Right-handed alpha
Helix 87	AJ6	C	374	379	Right-handed 310
Helix 88	AJ7	C	399	407	Right-handed alpha
Helix 89	AJ8	C	418	424	Right-handed alpha
Helix 90	AJ9	C	438	446	Right-handed 310
Helix 91	AK1	C	450	457	Right-handed alpha
Helix 92	AK2	C	512	522	Right-handed alpha

There are 26 sheets in PDB entry 9XWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	97	107	anti-parallel
Strand 4	A	74	85	anti-parallel
Strand 5	A	227	231	parallel
Strand 6	A	255	259	anti-parallel
Strand 7	A	247	248	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	97	107	anti-parallel
Strand 4	A	74	85	anti-parallel
Strand 5	A	221	224	parallel
Strand 6	A	266	267	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	117	first strand
Strand 2	A	152	157	anti-parallel
Strand 3	A	141	145	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	184	first strand
Strand 2	A	201	202	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	189	first strand
Strand 2	A	196	198	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	273	276	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	284	first strand
Strand 2	A	290	295	anti-parallel
Strand 3	A	331	337	parallel
Strand 4	A	350	354	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	501	503	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	601	first strand
Strand 2	A	552	557	anti-parallel
Strand 3	A	542	546	anti-parallel
Strand 4	A	624	627	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	588	first strand
Strand 2	A	583	584	anti-parallel
Strand 3	A	613	614	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	389	393	first strand
Strand 2	D	427	436	anti-parallel
Strand 3	D	555	559	anti-parallel
Strand 4	D	466	470	anti-parallel
Strand 5	D	414	415	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	396	398	first strand
Strand 2	D	569	572	parallel
Strand 3	D	427	436	anti-parallel
Strand 4	D	562	563	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	494	first strand
Strand 2	D	536	544	anti-parallel
Strand 3	D	529	533	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	166	176	anti-parallel
Strand 3	B	96	107	anti-parallel
Strand 4	B	74	85	anti-parallel
Strand 5	B	227	231	parallel
Strand 6	B	255	259	anti-parallel
Strand 7	B	247	248	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	166	176	anti-parallel
Strand 3	B	96	107	anti-parallel
Strand 4	B	74	85	anti-parallel
Strand 5	B	221	224	parallel
Strand 6	B	266	267	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	152	157	anti-parallel
Strand 3	B	141	145	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	184	first strand
Strand 2	B	201	202	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	196	198	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	238	first strand
Strand 2	B	273	276	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	284	first strand
Strand 2	B	290	295	anti-parallel
Strand 3	B	331	337	parallel
Strand 4	B	350	354	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	392	first strand
Strand 2	B	501	503	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	601	first strand
Strand 2	B	552	557	anti-parallel
Strand 3	B	542	546	anti-parallel
Strand 4	B	624	627	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	588	first strand
Strand 2	B	583	584	anti-parallel
Strand 3	B	613	614	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	393	first strand
Strand 2	C	427	436	anti-parallel
Strand 3	C	555	559	anti-parallel
Strand 4	C	466	470	anti-parallel
Strand 5	C	414	415	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	396	398	first strand
Strand 2	C	569	572	parallel
Strand 3	C	427	436	anti-parallel
Strand 4	C	562	563	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	494	first strand
Strand 2	C	536	544	anti-parallel
Strand 3	C	529	533	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XWA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XWA