Analysis of interatomic Contacts of Structural Units in PDB entry:
9XWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XWD entry

There are 6 chains in PDB entry 9XWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -7GLY 165
B
 SER -9GLY 165
C
 MET 1ARG 163
D
 HIS 0GLY 165
E
 MET 1GLY 165
F
 MET 1GLY 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9XWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
47 60Right-handed alpha
Helix 3
AA3
A
62 67Right-handed 310
Helix 4
AA4
A
78 87Right-handed alpha
Helix 5
AA5
A
100 114Right-handed alpha
Helix 6
AA6
A
133 144Right-handed alpha
Helix 7
AA7
A
152 162Right-handed alpha
Helix 8
AA8
B
15 27Right-handed alpha
Helix 9
AA9
B
47 60Right-handed alpha
Helix 10
AB1
B
62 66Right-handed 310
Helix 11
AB2
B
78 87Right-handed alpha
Helix 12
AB3
B
100 115Right-handed alpha
Helix 13
AB4
B
133 143Right-handed alpha
Helix 14
AB5
B
152 164Right-handed alpha
Helix 15
AB6
C
15 27Right-handed alpha
Helix 16
AB7
C
47 60Right-handed alpha
Helix 17
AB8
C
62 68Right-handed alpha
Helix 18
AB9
C
78 87Right-handed alpha
Helix 19
AC1
C
101 115Right-handed alpha
Helix 20
AC2
C
126 130Right-handed 310
Helix 21
AC3
C
133 143Right-handed alpha
Helix 22
AC4
C
152 163Right-handed alpha
Helix 23
AC5
D
15 27Right-handed alpha
Helix 24
AC6
D
47 59Right-handed alpha
Helix 25
AC7
D
78 87Right-handed alpha
Helix 26
AC8
D
102 115Right-handed alpha
Helix 27
AC9
D
126 130Right-handed 310
Helix 28
AD1
D
133 144Right-handed alpha
Helix 29
AD2
D
146 150Right-handed 310
Helix 30
AD3
D
152 165Right-handed alpha
Helix 31
AD4
E
15 27Right-handed alpha
Helix 32
AD5
E
47 59Right-handed alpha
Helix 33
AD6
E
63 68Right-handed 310
Helix 34
AD7
E
78 85Right-handed alpha
Helix 35
AD8
E
100 115Right-handed alpha
Helix 36
AD9
E
133 142Right-handed alpha
Helix 37
AE1
E
152 164Right-handed alpha
Helix 38
AE2
F
15 27Right-handed alpha
Helix 39
AE3
F
47 61Right-handed alpha
Helix 40
AE4
F
62 66Right-handed 310
Helix 41
AE5
F
78 87Right-handed alpha
Helix 42
AE6
F
103 115Right-handed alpha
Helix 43
AE7
F
133 141Right-handed alpha
Helix 44
AE8
F
146 150Right-handed 310
Helix 45
AE9
F
152 165Right-handed alpha
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There are 4 sheets in PDB entry 9XWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-6 -5first strand
Strand 2
B
-5 -4anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
31 36parallel
Strand 3
A
4 9parallel
Strand 4
A
90 95parallel
Strand 5
A
119 124parallel
Strand 6
B
119 124anti-parallel
Strand 7
B
90 95parallel
Strand 8
B
4 9parallel
Strand 9
B
31 36parallel
Strand 10
B
69 74parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 75first strand
Strand 2
C
31 37parallel
Strand 3
C
4 9parallel
Strand 4
C
90 95parallel
Strand 5
C
119 124parallel
Strand 6
E
119 124anti-parallel
Strand 7
E
90 95parallel
Strand 8
E
4 9parallel
Strand 9
E
31 36parallel
Strand 10
E
69 74parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 74first strand
Strand 2
D
31 36parallel
Strand 3
D
4 9parallel
Strand 4
D
90 94parallel
Strand 5
D
119 123parallel
Strand 6
F
119 124anti-parallel
Strand 7
F
90 95parallel
Strand 8
F
4 9parallel
Strand 9
F
31 37parallel
Strand 10
F
69 75parallel
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