Analysis of interatomic Contacts of Structural Units in PDB entry:
9XZJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XZJ entry

There are 8 chains in PDB entry 9XZJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 16	ALA 776
R	ARG 21	ASP 36
F	SER 136	ILE 956
S	PRO 2	GLU 161
X	G 1	G 45
A	C 1	T 21
B	G 3	C 17
Y	C 1	G 45

There are 92 helices in PDB entry 9XZJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	16	33	Right-handed alpha
Helix 2	AA2	C	38	54	Right-handed alpha
Helix 3	AA3	C	77	108	Right-handed alpha
Helix 4	AA4	C	111	137	Right-handed alpha
Helix 5	AA5	C	137	152	Right-handed alpha
Helix 6	AA6	C	158	171	Right-handed alpha
Helix 7	AA7	C	171	193	Right-handed alpha
Helix 8	AA8	C	197	212	Right-handed alpha
Helix 9	AA9	C	225	232	Right-handed alpha
Helix 10	AB1	C	232	255	Right-handed alpha
Helix 11	AB2	C	256	279	Right-handed alpha
Helix 12	AB3	C	282	296	Right-handed alpha
Helix 13	AB4	C	299	314	Right-handed alpha
Helix 14	AB5	C	315	328	Right-handed alpha
Helix 15	AB6	C	332	356	Right-handed alpha
Helix 16	AB7	C	357	361	Right-handed 310
Helix 17	AB8	C	362	385	Right-handed alpha
Helix 18	AB9	C	388	404	Right-handed alpha
Helix 19	AC1	C	406	413	Right-handed alpha
Helix 20	AC2	C	416	431	Right-handed alpha
Helix 21	AC3	C	438	455	Right-handed alpha
Helix 22	AC4	C	458	477	Right-handed alpha
Helix 23	AC5	C	481	497	Right-handed alpha
Helix 24	AC6	C	497	527	Right-handed alpha
Helix 25	AC7	C	556	574	Right-handed alpha
Helix 26	AC8	C	583	586	Right-handed 310
Helix 27	AC9	C	604	613	Right-handed alpha
Helix 28	AD1	C	614	616	Right-handed 310
Helix 29	AD2	C	622	630	Right-handed alpha
Helix 30	AD3	C	632	646	Right-handed alpha
Helix 31	AD4	C	688	723	Right-handed alpha
Helix 32	AD5	C	727	739	Right-handed alpha
Helix 33	AD6	C	745	759	Right-handed alpha
Helix 34	AD7	F	137	141	Right-handed 310
Helix 35	AD8	F	142	151	Right-handed alpha
Helix 36	AD9	F	154	161	Right-handed alpha
Helix 37	AE1	F	162	165	Right-handed 310
Helix 38	AE2	F	166	175	Right-handed alpha
Helix 39	AE3	F	179	190	Right-handed alpha
Helix 40	AE4	F	192	206	Right-handed alpha
Helix 41	AE5	F	214	227	Right-handed alpha
Helix 42	AE6	F	233	242	Right-handed alpha
Helix 43	AE7	F	246	258	Right-handed alpha
Helix 44	AE8	F	258	263	Right-handed alpha
Helix 45	AE9	F	269	281	Right-handed alpha
Helix 46	AF1	F	283	295	Right-handed alpha
Helix 47	AF2	F	296	300	Right-handed 310
Helix 48	AF3	F	302	324	Right-handed alpha
Helix 49	AF4	F	329	344	Right-handed alpha
Helix 50	AF5	F	368	377	Right-handed alpha
Helix 51	AF6	F	394	406	Right-handed alpha
Helix 52	AF7	F	417	428	Right-handed alpha
Helix 53	AF8	F	437	445	Right-handed alpha
Helix 54	AF9	F	445	452	Right-handed alpha
Helix 55	AG1	F	461	469	Right-handed alpha
Helix 56	AG2	F	475	492	Right-handed alpha
Helix 57	AG3	F	498	502	Right-handed 310
Helix 58	AG4	F	517	537	Right-handed alpha
Helix 59	AG5	F	543	547	Right-handed 310
Helix 60	AG6	F	549	560	Right-handed alpha
Helix 61	AG7	F	575	578	Right-handed 310
Helix 62	AG8	F	579	588	Right-handed alpha
Helix 63	AG9	F	598	602	Right-handed 310
Helix 64	AH1	F	604	608	Right-handed 310
Helix 65	AH2	F	611	616	Right-handed alpha
Helix 66	AH3	F	631	647	Right-handed alpha
Helix 67	AH4	F	676	689	Right-handed alpha
Helix 68	AH5	F	706	718	Right-handed alpha
Helix 69	AH6	F	719	727	Right-handed alpha
Helix 70	AH7	F	732	738	Right-handed alpha
Helix 71	AH8	F	743	755	Right-handed alpha
Helix 72	AH9	F	756	770	Right-handed alpha
Helix 73	AI1	F	772	784	Right-handed alpha
Helix 74	AI2	F	787	791	Right-handed 310
Helix 75	AI3	F	798	802	Right-handed alpha
Helix 76	AI4	F	821	828	Right-handed 310
Helix 77	AI5	F	832	836	Right-handed 310
Helix 78	AI6	F	837	850	Right-handed alpha
Helix 79	AI7	F	858	868	Right-handed alpha
Helix 80	AI8	F	878	882	Right-handed alpha
Helix 81	AI9	F	925	934	Right-handed alpha
Helix 82	AJ1	F	935	940	Right-handed 310
Helix 83	AJ2	F	942	948	Right-handed alpha
Helix 84	AJ3	S	18	22	Right-handed alpha
Helix 85	AJ4	S	24	34	Right-handed alpha
Helix 86	AJ5	S	51	65	Right-handed alpha
Helix 87	AJ6	S	86	93	Right-handed alpha
Helix 88	AJ7	S	96	111	Right-handed alpha
Helix 89	AJ8	S	112	128	Right-handed alpha
Helix 90	AJ9	S	131	140	Right-handed alpha
Helix 91	AK1	S	146	158	Right-handed alpha
Helix 92	AK2	S	159	161	Right-handed 310

There are 10 sheets in PDB entry 9XZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	541	first strand
Strand 2	R	22	35	parallel
Strand 3	C	577	581	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	541	first strand
Strand 2	R	22	35	parallel
Strand 3	C	587	592	anti-parallel
Strand 4	C	600	602	anti-parallel
Strand 5	C	681	683	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	621	first strand
Strand 2	C	668	671	anti-parallel
Strand 3	C	649	651	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	726	first strand
Strand 2	C	771	774	anti-parallel
Strand 3	C	762	764	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	432	436	first strand
Strand 2	F	411	415	parallel
Strand 3	F	569	573	parallel
Strand 4	F	592	597	parallel
Strand 5	F	384	389	parallel
Strand 6	F	620	624	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	505	507	first strand
Strand 2	F	513	515	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	696	698	first strand
Strand 2	F	793	797	parallel
Strand 3	F	670	674	parallel
Strand 4	F	806	811	parallel
Strand 5	F	851	856	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	873	877	first strand
Strand 2	F	904	908	anti-parallel
Strand 3	F	922	924	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	911	912	first strand
Strand 2	F	918	919	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	13	17	first strand
Strand 2	S	3	7	anti-parallel
Strand 3	S	45	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XZJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XZJ