Analysis of interatomic Contacts of Structural Units in PDB entry:
9XZL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XZL entry

There are 4 chains in PDB entry 9XZL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLY 16	LEU 300
F	SER 136	ILE 956
S	PRO 2	GLU 161
X	C 18	C 24

There are 72 helices in PDB entry 9XZL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	16	33	Right-handed alpha
Helix 2	AA2	C	38	54	Right-handed alpha
Helix 3	AA3	C	77	108	Right-handed alpha
Helix 4	AA4	C	111	137	Right-handed alpha
Helix 5	AA5	C	137	152	Right-handed alpha
Helix 6	AA6	C	158	171	Right-handed alpha
Helix 7	AA7	C	171	193	Right-handed alpha
Helix 8	AA8	C	197	212	Right-handed alpha
Helix 9	AA9	C	225	232	Right-handed alpha
Helix 10	AB1	C	232	255	Right-handed alpha
Helix 11	AB2	C	256	279	Right-handed alpha
Helix 12	AB3	C	282	296	Right-handed alpha
Helix 13	AB4	C	297	300	Right-handed 310
Helix 14	AB5	F	137	141	Right-handed 310
Helix 15	AB6	F	142	151	Right-handed alpha
Helix 16	AB7	F	154	161	Right-handed alpha
Helix 17	AB8	F	162	165	Right-handed 310
Helix 18	AB9	F	166	175	Right-handed alpha
Helix 19	AC1	F	179	190	Right-handed alpha
Helix 20	AC2	F	192	206	Right-handed alpha
Helix 21	AC3	F	214	227	Right-handed alpha
Helix 22	AC4	F	233	242	Right-handed alpha
Helix 23	AC5	F	246	258	Right-handed alpha
Helix 24	AC6	F	258	263	Right-handed alpha
Helix 25	AC7	F	269	281	Right-handed alpha
Helix 26	AC8	F	283	295	Right-handed alpha
Helix 27	AC9	F	296	300	Right-handed 310
Helix 28	AD1	F	302	324	Right-handed alpha
Helix 29	AD2	F	329	344	Right-handed alpha
Helix 30	AD3	F	368	377	Right-handed alpha
Helix 31	AD4	F	394	406	Right-handed alpha
Helix 32	AD5	F	417	428	Right-handed alpha
Helix 33	AD6	F	437	445	Right-handed alpha
Helix 34	AD7	F	445	452	Right-handed alpha
Helix 35	AD8	F	461	469	Right-handed alpha
Helix 36	AD9	F	475	492	Right-handed alpha
Helix 37	AE1	F	498	502	Right-handed 310
Helix 38	AE2	F	517	537	Right-handed alpha
Helix 39	AE3	F	543	547	Right-handed 310
Helix 40	AE4	F	549	560	Right-handed alpha
Helix 41	AE5	F	575	578	Right-handed 310
Helix 42	AE6	F	579	588	Right-handed alpha
Helix 43	AE7	F	598	602	Right-handed 310
Helix 44	AE8	F	604	608	Right-handed 310
Helix 45	AE9	F	611	616	Right-handed alpha
Helix 46	AF1	F	631	647	Right-handed alpha
Helix 47	AF2	F	676	689	Right-handed alpha
Helix 48	AF3	F	706	718	Right-handed alpha
Helix 49	AF4	F	719	727	Right-handed alpha
Helix 50	AF5	F	732	738	Right-handed alpha
Helix 51	AF6	F	743	755	Right-handed alpha
Helix 52	AF7	F	756	770	Right-handed alpha
Helix 53	AF8	F	772	784	Right-handed alpha
Helix 54	AF9	F	787	791	Right-handed 310
Helix 55	AG1	F	798	802	Right-handed alpha
Helix 56	AG2	F	821	828	Right-handed 310
Helix 57	AG3	F	832	836	Right-handed 310
Helix 58	AG4	F	837	850	Right-handed alpha
Helix 59	AG5	F	858	868	Right-handed alpha
Helix 60	AG6	F	878	882	Right-handed alpha
Helix 61	AG7	F	925	934	Right-handed alpha
Helix 62	AG8	F	935	940	Right-handed 310
Helix 63	AG9	F	942	948	Right-handed alpha
Helix 64	AH1	S	18	22	Right-handed alpha
Helix 65	AH2	S	24	34	Right-handed alpha
Helix 66	AH3	S	51	65	Right-handed alpha
Helix 67	AH4	S	86	93	Right-handed alpha
Helix 68	AH5	S	96	111	Right-handed alpha
Helix 69	AH6	S	112	128	Right-handed alpha
Helix 70	AH7	S	131	140	Right-handed alpha
Helix 71	AH8	S	146	158	Right-handed alpha
Helix 72	AH9	S	159	161	Right-handed 310

There are 6 sheets in PDB entry 9XZL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	432	436	first strand
Strand 2	F	411	415	parallel
Strand 3	F	569	573	parallel
Strand 4	F	592	597	parallel
Strand 5	F	384	388	parallel
Strand 6	F	620	623	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	505	507	first strand
Strand 2	F	513	515	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	696	698	first strand
Strand 2	F	793	797	parallel
Strand 3	F	670	674	parallel
Strand 4	F	806	811	parallel
Strand 5	F	851	856	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	873	877	first strand
Strand 2	F	904	908	anti-parallel
Strand 3	F	922	924	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	911	912	first strand
Strand 2	F	918	919	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	13	17	first strand
Strand 2	S	3	7	anti-parallel
Strand 3	S	45	46	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XZL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XZL