Analysis of interatomic Contacts of Structural Units in PDB entry:
9XZM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9XZM entry

There are 5 chains in PDB entry 9XZM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	G 1	G 45
B	G 3	C 17
Y	C 1	G 45
A	C 1	T 21
F	THR 364	ILE 956

There are 35 helices in PDB entry 9XZM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	368	377	Right-handed alpha
Helix 2	AA2	F	394	406	Right-handed alpha
Helix 3	AA3	F	417	428	Right-handed alpha
Helix 4	AA4	F	437	445	Right-handed alpha
Helix 5	AA5	F	445	452	Right-handed alpha
Helix 6	AA6	F	461	469	Right-handed alpha
Helix 7	AA7	F	475	492	Right-handed alpha
Helix 8	AA8	F	498	502	Right-handed 310
Helix 9	AA9	F	517	537	Right-handed alpha
Helix 10	AB1	F	543	547	Right-handed 310
Helix 11	AB2	F	549	560	Right-handed alpha
Helix 12	AB3	F	575	578	Right-handed 310
Helix 13	AB4	F	579	588	Right-handed alpha
Helix 14	AB5	F	598	602	Right-handed 310
Helix 15	AB6	F	604	608	Right-handed 310
Helix 16	AB7	F	611	616	Right-handed alpha
Helix 17	AB8	F	631	647	Right-handed alpha
Helix 18	AB9	F	676	689	Right-handed alpha
Helix 19	AC1	F	702	705	Right-handed 310
Helix 20	AC2	F	706	718	Right-handed alpha
Helix 21	AC3	F	719	727	Right-handed alpha
Helix 22	AC4	F	732	738	Right-handed alpha
Helix 23	AC5	F	743	755	Right-handed alpha
Helix 24	AC6	F	756	770	Right-handed alpha
Helix 25	AC7	F	772	784	Right-handed alpha
Helix 26	AC8	F	787	791	Right-handed 310
Helix 27	AC9	F	798	802	Right-handed alpha
Helix 28	AD1	F	821	828	Right-handed 310
Helix 29	AD2	F	832	836	Right-handed 310
Helix 30	AD3	F	837	850	Right-handed alpha
Helix 31	AD4	F	858	868	Right-handed alpha
Helix 32	AD5	F	878	882	Right-handed alpha
Helix 33	AD6	F	925	934	Right-handed alpha
Helix 34	AD7	F	935	940	Right-handed 310
Helix 35	AD8	F	942	948	Right-handed alpha

There are 5 sheets in PDB entry 9XZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	432	436	first strand
Strand 2	F	411	415	parallel
Strand 3	F	569	573	parallel
Strand 4	F	592	597	parallel
Strand 5	F	384	389	parallel
Strand 6	F	620	624	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	505	507	first strand
Strand 2	F	513	515	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	696	698	first strand
Strand 2	F	793	797	parallel
Strand 3	F	670	674	parallel
Strand 4	F	806	811	parallel
Strand 5	F	851	856	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	873	877	first strand
Strand 2	F	904	908	anti-parallel
Strand 3	F	922	924	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	911	912	first strand
Strand 2	F	918	919	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9XZM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9XZM