Analysis of interatomic Contacts of Structural Units in PDB entry:
9XZX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9XZX entry

There are 3 chains in PDB entry 9XZX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 28GLY 263
C
 VAL 18SER 132
D
 VAL 18SER 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9XZX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 51Right-handed alpha
Helix 2
AA2
A
94 103Right-handed alpha
Helix 3
AA3
A
147 151Right-handed 310
Helix 4
AA4
A
180 196Right-handed alpha
Helix 5
AA5
A
233 239Right-handed alpha
Helix 6
AA6
A
240 242Right-handed 310
Helix 7
AA7
C
77 80Right-handed 310
Helix 8
AA8
C
102 106Right-handed 310
Helix 9
AA9
D
77 80Right-handed 310
Helix 10
AB1
D
102 106Right-handed 310
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There are 10 sheets in PDB entry 9XZX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 62first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
139 141anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 66first strand
Strand 2
A
72 75anti-parallel
Strand 3
A
85 91anti-parallel
Strand 4
A
131 136parallel
Strand 5
A
112 113anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 173first strand
Strand 2
A
153 161anti-parallel
Strand 3
A
253 259parallel
Strand 4
A
207 213anti-parallel
Strand 5
A
219 223anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
246 248anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 23first strand
Strand 2
C
34 41anti-parallel
Strand 3
C
93 98anti-parallel
Strand 4
C
83 88anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 28first strand
Strand 2
C
126 130parallel
Strand 3
C
107 115anti-parallel
Strand 4
C
47 55anti-parallel
Strand 5
C
62 67anti-parallel
Strand 6
C
73 75anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 28first strand
Strand 2
C
126 130parallel
Strand 3
C
107 115anti-parallel
Strand 4
C
120 122anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 23first strand
Strand 2
D
34 40anti-parallel
Strand 3
D
93 98anti-parallel
Strand 4
D
83 88anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 29first strand
Strand 2
D
134 139parallel
Strand 3
D
107 114anti-parallel
Strand 4
D
48 54anti-parallel
Strand 5
D
61 66anti-parallel
Strand 6
D
72 75anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 29first strand
Strand 2
D
134 139parallel
Strand 3
D
107 114anti-parallel
Strand 4
D
129 130anti-parallel
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