Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y02


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y02 entry

There are 2 chains in PDB entry 9Y02 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 64GLU 287
B
 ARG 2PRO 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9Y02. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 80Right-handed alpha
Helix 2
AA2
A
81 95Right-handed alpha
Helix 3
AA3
A
99 107Right-handed alpha
Helix 4
AA4
A
108 128Right-handed alpha
Helix 5
AA5
A
128 136Right-handed alpha
Helix 6
AA6
A
145 153Right-handed alpha
Helix 7
AA7
A
153 158Right-handed alpha
Helix 8
AA8
A
163 184Right-handed alpha
Helix 9
AA9
A
192 217Right-handed alpha
Helix 10
AB1
A
232 255Right-handed alpha
Helix 11
AB2
A
259 262Right-handed 310
Helix 12
AB3
A
263 287Right-handed alpha
Helix 13
AB4
B
42 53Right-handed alpha
Helix 14
AB5
B
58 78Right-handed alpha
Helix 15
AB6
B
100 106Right-handed alpha
Helix 16
AB7
B
107 120Right-handed alpha
Helix 17
AB8
B
158 171Right-handed alpha
Helix 18
AB9
B
188 202Right-handed alpha
Helix 19
AC1
B
232 249Right-handed alpha
Helix 20
AC2
B
259 265Right-handed alpha
Helix 21
AC3
B
273 277Right-handed 310
Helix 22
AC4
B
282 296Right-handed alpha
Helix 23
AC5
B
310 317Right-handed alpha
Helix 24
AC6
B
320 328Right-handed alpha
Helix 25
AC7
B
329 331Right-handed 310
Helix 26
AC8
B
357 371Right-handed alpha
Helix 27
AC9
B
392 411Right-handed alpha
Helix 28
AD1
B
414 419Right-handed alpha
Helix 29
AD2
B
428 430Right-handed 310
Helix 30
AD3
B
431 451Right-handed alpha
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There are 3 sheets in PDB entry 9Y02. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
4 9parallel
Strand 3
B
91 98parallel
Strand 4
B
122 129parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 213first strand
Strand 2
B
175 181parallel
Strand 3
B
151 154parallel
Strand 4
B
253 255parallel
Strand 5
B
301 303parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
388 389first strand
Strand 2
B
455 456parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il