Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y04 entry

There are 6 chains in PDB entry 9Y04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 200PHE 768
B
 GLU 200PHE 768
C
 GLU 200PHE 768
D
 GLU 200PHE 768
E
 GLU 200PHE 768
F
 GLU 200PHE 768
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are166 helices in PDB entry 9Y04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
202 206Right-handed 310
Helix 2
AA2
A
210 226Right-handed alpha
Helix 3
AA3
A
226 234Right-handed alpha
Helix 4
AA4
A
250 261Right-handed alpha
Helix 5
AA5
A
271 276Right-handed alpha
Helix 6
AA6
A
280 296Right-handed alpha
Helix 7
AA7
A
305 310Right-handed alpha
Helix 8
AA8
A
318 334Right-handed alpha
Helix 9
AA9
A
349 353Right-handed 310
Helix 10
AB1
A
373 386Right-handed alpha
Helix 11
AB2
A
395 403Right-handed alpha
Helix 12
AB3
A
407 426Right-handed alpha
Helix 13
AB4
A
448 456Right-handed alpha
Helix 14
AB5
A
475 479Right-handed 310
Helix 15
AB6
A
482 499Right-handed alpha
Helix 16
AB7
A
499 507Right-handed alpha
Helix 17
AB8
A
523 535Right-handed alpha
Helix 18
AB9
A
544 550Right-handed alpha
Helix 19
AC1
A
556 569Right-handed alpha
Helix 20
AC2
A
578 585Right-handed alpha
Helix 21
AC3
A
599 610Right-handed alpha
Helix 22
AC4
A
630 635Right-handed 310
Helix 23
AC5
A
649 661Right-handed alpha
Helix 24
AC6
A
671 678Right-handed alpha
Helix 25
AC7
A
683 707Right-handed alpha
Helix 26
AC8
A
732 742Right-handed alpha
Helix 27
AC9
A
748 761Right-handed alpha
Helix 28
AD1
B
202 206Right-handed 310
Helix 29
AD2
B
210 226Right-handed alpha
Helix 30
AD3
B
226 234Right-handed alpha
Helix 31
AD4
B
250 262Right-handed alpha
Helix 32
AD5
B
271 276Right-handed alpha
Helix 33
AD6
B
280 296Right-handed alpha
Helix 34
AD7
B
305 310Right-handed alpha
Helix 35
AD8
B
318 334Right-handed alpha
Helix 36
AD9
B
349 353Right-handed 310
Helix 37
AE1
B
373 386Right-handed alpha
Helix 38
AE2
B
395 403Right-handed alpha
Helix 39
AE3
B
407 426Right-handed alpha
Helix 40
AE4
B
448 456Right-handed alpha
Helix 41
AE5
B
475 479Right-handed 310
Helix 42
AE6
B
482 499Right-handed alpha
Helix 43
AE7
B
499 507Right-handed alpha
Helix 44
AE8
B
523 535Right-handed alpha
Helix 45
AE9
B
544 550Right-handed alpha
Helix 46
AF1
B
556 569Right-handed alpha
Helix 47
AF2
B
578 585Right-handed alpha
Helix 48
AF3
B
599 610Right-handed alpha
Helix 49
AF4
B
630 635Right-handed 310
Helix 50
AF5
B
649 661Right-handed alpha
Helix 51
AF6
B
672 678Right-handed alpha
Helix 52
AF7
B
683 706Right-handed alpha
Helix 53
AF8
B
732 742Right-handed alpha
Helix 54
AF9
B
748 761Right-handed alpha
Helix 55
AG1
B
762 766Right-handed 310
Helix 56
AG2
C
202 206Right-handed 310
Helix 57
AG3
C
210 226Right-handed alpha
Helix 58
AG4
C
226 234Right-handed alpha
Helix 59
AG5
C
250 261Right-handed alpha
Helix 60
AG6
C
271 276Right-handed alpha
Helix 61
AG7
C
280 296Right-handed alpha
Helix 62
AG8
C
305 310Right-handed alpha
Helix 63
AG9
C
318 334Right-handed alpha
Helix 64
AH1
C
349 353Right-handed 310
Helix 65
AH2
C
373 385Right-handed alpha
Helix 66
AH3
C
395 403Right-handed alpha
Helix 67
AH4
C
407 425Right-handed alpha
Helix 68
AH5
C
448 456Right-handed alpha
Helix 69
AH6
C
475 479Right-handed 310
Helix 70
AH7
C
482 499Right-handed alpha
Helix 71
AH8
C
499 507Right-handed alpha
Helix 72
AH9
C
523 535Right-handed alpha
Helix 73
AI1
C
544 550Right-handed alpha
Helix 74
AI2
C
556 569Right-handed alpha
Helix 75
AI3
C
578 585Right-handed alpha
Helix 76
AI4
C
599 610Right-handed alpha
Helix 77
AI5
C
630 635Right-handed 310
Helix 78
AI6
C
649 661Right-handed alpha
Helix 79
AI7
C
671 678Right-handed alpha
Helix 80
AI8
C
683 707Right-handed alpha
Helix 81
AI9
C
732 743Right-handed alpha
Helix 82
AJ1
C
748 761Right-handed alpha
Helix 83
AJ2
C
762 766Right-handed 310
Helix 84
AJ3
D
202 206Right-handed 310
Helix 85
AJ4
D
210 226Right-handed alpha
Helix 86
AJ5
D
226 234Right-handed alpha
Helix 87
AJ6
D
250 261Right-handed alpha
Helix 88
AJ7
D
271 276Right-handed alpha
Helix 89
AJ8
D
280 296Right-handed alpha
Helix 90
AJ9
D
305 310Right-handed alpha
Helix 91
AK1
D
318 334Right-handed alpha
Helix 92
AK2
D
349 353Right-handed 310
Helix 93
AK3
D
373 385Right-handed alpha
Helix 94
AK4
D
395 403Right-handed alpha
Helix 95
AK5
D
407 426Right-handed alpha
Helix 96
AK6
D
448 456Right-handed alpha
Helix 97
AK7
D
475 479Right-handed 310
Helix 98
AK8
D
482 499Right-handed alpha
Helix 99
AK9
D
499 507Right-handed alpha
Helix 100
AL1
D
523 535Right-handed alpha
Helix 101
AL2
D
544 550Right-handed alpha
Helix 102
AL3
D
556 569Right-handed alpha
Helix 103
AL4
D
578 585Right-handed alpha
Helix 104
AL5
D
598 610Right-handed alpha
Helix 105
AL6
D
630 635Right-handed 310
Helix 106
AL7
D
649 661Right-handed alpha
Helix 107
AL8
D
671 678Right-handed alpha
Helix 108
AL9
D
683 707Right-handed alpha
Helix 109
AM1
D
732 742Right-handed alpha
Helix 110
AM2
D
748 761Right-handed alpha
Helix 111
AM3
E
202 206Right-handed 310
Helix 112
AM4
E
210 226Right-handed alpha
Helix 113
AM5
E
226 234Right-handed alpha
Helix 114
AM6
E
250 262Right-handed alpha
Helix 115
AM7
E
271 276Right-handed alpha
Helix 116
AM8
E
280 296Right-handed alpha
Helix 117
AM9
E
305 310Right-handed alpha
Helix 118
AN1
E
318 334Right-handed alpha
Helix 119
AN2
E
349 353Right-handed 310
Helix 120
AN3
E
373 386Right-handed alpha
Helix 121
AN4
E
395 403Right-handed alpha
Helix 122
AN5
E
407 426Right-handed alpha
Helix 123
AN6
E
448 456Right-handed alpha
Helix 124
AN7
E
475 479Right-handed 310
Helix 125
AN8
E
482 499Right-handed alpha
Helix 126
AN9
E
499 507Right-handed alpha
Helix 127
AO1
E
523 535Right-handed alpha
Helix 128
AO2
E
544 550Right-handed alpha
Helix 129
AO3
E
556 569Right-handed alpha
Helix 130
AO4
E
578 585Right-handed alpha
Helix 131
AO5
E
599 610Right-handed alpha
Helix 132
AO6
E
630 635Right-handed 310
Helix 133
AO7
E
649 661Right-handed alpha
Helix 134
AO8
E
672 678Right-handed alpha
Helix 135
AO9
E
683 706Right-handed alpha
Helix 136
AP1
E
732 742Right-handed alpha
Helix 137
AP2
E
748 761Right-handed alpha
Helix 138
AP3
E
762 766Right-handed 310
Helix 139
AP4
F
202 206Right-handed 310
Helix 140
AP5
F
210 226Right-handed alpha
Helix 141
AP6
F
226 234Right-handed alpha
Helix 142
AP7
F
250 261Right-handed alpha
Helix 143
AP8
F
271 276Right-handed alpha
Helix 144
AP9
F
280 296Right-handed alpha
Helix 145
AQ1
F
305 310Right-handed alpha
Helix 146
AQ2
F
318 334Right-handed alpha
Helix 147
AQ3
F
349 353Right-handed 310
Helix 148
AQ4
F
373 385Right-handed alpha
Helix 149
AQ5
F
395 403Right-handed alpha
Helix 150
AQ6
F
407 425Right-handed alpha
Helix 151
AQ7
F
448 456Right-handed alpha
Helix 152
AQ8
F
475 479Right-handed 310
Helix 153
AQ9
F
482 499Right-handed alpha
Helix 154
AR1
F
499 507Right-handed alpha
Helix 155
AR2
F
523 535Right-handed alpha
Helix 156
AR3
F
544 550Right-handed alpha
Helix 157
AR4
F
556 569Right-handed alpha
Helix 158
AR5
F
578 585Right-handed alpha
Helix 159
AR6
F
599 610Right-handed alpha
Helix 160
AR7
F
630 635Right-handed 310
Helix 161
AR8
F
649 661Right-handed alpha
Helix 162
AR9
F
671 678Right-handed alpha
Helix 163
AS1
F
683 706Right-handed alpha
Helix 164
AS2
F
732 743Right-handed alpha
Helix 165
AS3
F
748 761Right-handed alpha
Helix 166
AS4
F
762 766Right-handed 310
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There are 12 sheets in PDB entry 9Y04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
299 304parallel
Strand 3
A
341 347parallel
Strand 4
A
240 244parallel
Strand 5
A
365 368parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 543first strand
Strand 2
A
572 577parallel
Strand 3
A
617 623parallel
Strand 4
A
513 517parallel
Strand 5
A
641 644parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 270first strand
Strand 2
B
299 304parallel
Strand 3
B
341 347parallel
Strand 4
B
240 244parallel
Strand 5
B
365 368parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
538 543first strand
Strand 2
B
572 577parallel
Strand 3
B
617 623parallel
Strand 4
B
513 517parallel
Strand 5
B
641 644parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
265 270first strand
Strand 2
C
299 304parallel
Strand 3
C
341 347parallel
Strand 4
C
240 244parallel
Strand 5
C
365 368parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
538 543first strand
Strand 2
C
572 577parallel
Strand 3
C
617 623parallel
Strand 4
C
513 517parallel
Strand 5
C
641 644parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
265 270first strand
Strand 2
D
299 304parallel
Strand 3
D
341 347parallel
Strand 4
D
240 244parallel
Strand 5
D
365 368parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
538 543first strand
Strand 2
D
572 577parallel
Strand 3
D
617 623parallel
Strand 4
D
513 517parallel
Strand 5
D
641 644parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
265 270first strand
Strand 2
E
299 304parallel
Strand 3
E
341 347parallel
Strand 4
E
240 244parallel
Strand 5
E
365 368parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
538 543first strand
Strand 2
E
572 577parallel
Strand 3
E
617 623parallel
Strand 4
E
513 517parallel
Strand 5
E
641 644parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
265 270first strand
Strand 2
F
299 304parallel
Strand 3
F
341 347parallel
Strand 4
F
240 244parallel
Strand 5
F
365 368parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
538 543first strand
Strand 2
F
572 577parallel
Strand 3
F
617 623parallel
Strand 4
F
513 517parallel
Strand 5
F
641 644parallel
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