Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y07 entry

There are 6 chains in PDB entry 9Y07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 200	PHE 768
B	GLU 200	PHE 768
C	GLU 200	PHE 768
D	GLU 200	PHE 768
E	GLU 200	PHE 768
F	GLU 200	PHE 768

There are168 helices in PDB entry 9Y07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	202	206	Right-handed 310
Helix 2	AA2	A	210	226	Right-handed alpha
Helix 3	AA3	A	226	234	Right-handed alpha
Helix 4	AA4	A	250	261	Right-handed alpha
Helix 5	AA5	A	271	277	Right-handed alpha
Helix 6	AA6	A	280	296	Right-handed alpha
Helix 7	AA7	A	305	310	Right-handed alpha
Helix 8	AA8	A	318	334	Right-handed alpha
Helix 9	AA9	A	349	353	Right-handed 310
Helix 10	AB1	A	373	385	Right-handed alpha
Helix 11	AB2	A	395	403	Right-handed alpha
Helix 12	AB3	A	407	425	Right-handed alpha
Helix 13	AB4	A	448	456	Right-handed alpha
Helix 14	AB5	A	475	479	Right-handed 310
Helix 15	AB6	A	482	499	Right-handed alpha
Helix 16	AB7	A	499	507	Right-handed alpha
Helix 17	AB8	A	523	535	Right-handed alpha
Helix 18	AB9	A	544	550	Right-handed alpha
Helix 19	AC1	A	557	569	Right-handed alpha
Helix 20	AC2	A	578	584	Right-handed alpha
Helix 21	AC3	A	599	610	Right-handed alpha
Helix 22	AC4	A	630	635	Right-handed 310
Helix 23	AC5	A	649	661	Right-handed alpha
Helix 24	AC6	A	672	678	Right-handed alpha
Helix 25	AC7	A	683	706	Right-handed alpha
Helix 26	AC8	A	732	743	Right-handed alpha
Helix 27	AC9	A	748	761	Right-handed alpha
Helix 28	AD1	A	762	766	Right-handed 310
Helix 29	AD2	B	202	206	Right-handed 310
Helix 30	AD3	B	210	226	Right-handed alpha
Helix 31	AD4	B	226	234	Right-handed alpha
Helix 32	AD5	B	250	262	Right-handed alpha
Helix 33	AD6	B	271	277	Right-handed alpha
Helix 34	AD7	B	280	296	Right-handed alpha
Helix 35	AD8	B	305	310	Right-handed alpha
Helix 36	AD9	B	318	334	Right-handed alpha
Helix 37	AE1	B	349	353	Right-handed 310
Helix 38	AE2	B	373	385	Right-handed alpha
Helix 39	AE3	B	395	403	Right-handed alpha
Helix 40	AE4	B	407	425	Right-handed alpha
Helix 41	AE5	B	448	456	Right-handed alpha
Helix 42	AE6	B	475	479	Right-handed 310
Helix 43	AE7	B	482	499	Right-handed alpha
Helix 44	AE8	B	499	507	Right-handed alpha
Helix 45	AE9	B	523	535	Right-handed alpha
Helix 46	AF1	B	544	550	Right-handed alpha
Helix 47	AF2	B	557	569	Right-handed alpha
Helix 48	AF3	B	578	584	Right-handed alpha
Helix 49	AF4	B	599	610	Right-handed alpha
Helix 50	AF5	B	630	635	Right-handed 310
Helix 51	AF6	B	649	661	Right-handed alpha
Helix 52	AF7	B	672	678	Right-handed alpha
Helix 53	AF8	B	683	705	Right-handed alpha
Helix 54	AF9	B	732	743	Right-handed alpha
Helix 55	AG1	B	748	761	Right-handed alpha
Helix 56	AG2	B	762	766	Right-handed 310
Helix 57	AG3	C	202	206	Right-handed 310
Helix 58	AG4	C	210	226	Right-handed alpha
Helix 59	AG5	C	226	234	Right-handed alpha
Helix 60	AG6	C	250	261	Right-handed alpha
Helix 61	AG7	C	271	277	Right-handed alpha
Helix 62	AG8	C	280	296	Right-handed alpha
Helix 63	AG9	C	305	310	Right-handed alpha
Helix 64	AH1	C	318	334	Right-handed alpha
Helix 65	AH2	C	349	353	Right-handed 310
Helix 66	AH3	C	373	385	Right-handed alpha
Helix 67	AH4	C	395	403	Right-handed alpha
Helix 68	AH5	C	407	425	Right-handed alpha
Helix 69	AH6	C	448	456	Right-handed alpha
Helix 70	AH7	C	475	479	Right-handed 310
Helix 71	AH8	C	482	499	Right-handed alpha
Helix 72	AH9	C	499	507	Right-handed alpha
Helix 73	AI1	C	523	535	Right-handed alpha
Helix 74	AI2	C	543	550	Right-handed alpha
Helix 75	AI3	C	557	569	Right-handed alpha
Helix 76	AI4	C	578	584	Right-handed alpha
Helix 77	AI5	C	599	610	Right-handed alpha
Helix 78	AI6	C	630	635	Right-handed 310
Helix 79	AI7	C	649	661	Right-handed alpha
Helix 80	AI8	C	672	678	Right-handed alpha
Helix 81	AI9	C	683	706	Right-handed alpha
Helix 82	AJ1	C	732	743	Right-handed alpha
Helix 83	AJ2	C	748	761	Right-handed alpha
Helix 84	AJ3	C	762	766	Right-handed 310
Helix 85	AJ4	D	202	206	Right-handed 310
Helix 86	AJ5	D	210	226	Right-handed alpha
Helix 87	AJ6	D	226	234	Right-handed alpha
Helix 88	AJ7	D	250	261	Right-handed alpha
Helix 89	AJ8	D	271	277	Right-handed alpha
Helix 90	AJ9	D	280	296	Right-handed alpha
Helix 91	AK1	D	305	310	Right-handed alpha
Helix 92	AK2	D	318	334	Right-handed alpha
Helix 93	AK3	D	349	353	Right-handed 310
Helix 94	AK4	D	354	359	Right-handed alpha
Helix 95	AK5	D	373	385	Right-handed alpha
Helix 96	AK6	D	395	403	Right-handed alpha
Helix 97	AK7	D	407	425	Right-handed alpha
Helix 98	AK8	D	448	456	Right-handed alpha
Helix 99	AK9	D	475	479	Right-handed 310
Helix 100	AL1	D	482	499	Right-handed alpha
Helix 101	AL2	D	499	507	Right-handed alpha
Helix 102	AL3	D	523	535	Right-handed alpha
Helix 103	AL4	D	544	550	Right-handed alpha
Helix 104	AL5	D	557	569	Right-handed alpha
Helix 105	AL6	D	578	584	Right-handed alpha
Helix 106	AL7	D	599	610	Right-handed alpha
Helix 107	AL8	D	630	635	Right-handed 310
Helix 108	AL9	D	649	661	Right-handed alpha
Helix 109	AM1	D	672	678	Right-handed alpha
Helix 110	AM2	D	683	706	Right-handed alpha
Helix 111	AM3	D	732	743	Right-handed alpha
Helix 112	AM4	D	748	761	Right-handed alpha
Helix 113	AM5	D	762	766	Right-handed 310
Helix 114	AM6	E	202	206	Right-handed 310
Helix 115	AM7	E	210	226	Right-handed alpha
Helix 116	AM8	E	226	234	Right-handed alpha
Helix 117	AM9	E	250	262	Right-handed alpha
Helix 118	AN1	E	271	277	Right-handed alpha
Helix 119	AN2	E	280	296	Right-handed alpha
Helix 120	AN3	E	305	310	Right-handed alpha
Helix 121	AN4	E	318	334	Right-handed alpha
Helix 122	AN5	E	349	353	Right-handed 310
Helix 123	AN6	E	373	385	Right-handed alpha
Helix 124	AN7	E	395	403	Right-handed alpha
Helix 125	AN8	E	407	425	Right-handed alpha
Helix 126	AN9	E	448	456	Right-handed alpha
Helix 127	AO1	E	475	479	Right-handed 310
Helix 128	AO2	E	482	499	Right-handed alpha
Helix 129	AO3	E	499	507	Right-handed alpha
Helix 130	AO4	E	523	535	Right-handed alpha
Helix 131	AO5	E	544	550	Right-handed alpha
Helix 132	AO6	E	557	569	Right-handed alpha
Helix 133	AO7	E	578	584	Right-handed alpha
Helix 134	AO8	E	599	610	Right-handed alpha
Helix 135	AO9	E	630	635	Right-handed 310
Helix 136	AP1	E	649	661	Right-handed alpha
Helix 137	AP2	E	672	678	Right-handed alpha
Helix 138	AP3	E	683	705	Right-handed alpha
Helix 139	AP4	E	732	743	Right-handed alpha
Helix 140	AP5	E	748	761	Right-handed alpha
Helix 141	AP6	E	762	766	Right-handed 310
Helix 142	AP7	F	202	206	Right-handed 310
Helix 143	AP8	F	210	226	Right-handed alpha
Helix 144	AP9	F	226	234	Right-handed alpha
Helix 145	AQ1	F	250	261	Right-handed alpha
Helix 146	AQ2	F	271	277	Right-handed alpha
Helix 147	AQ3	F	280	296	Right-handed alpha
Helix 148	AQ4	F	305	310	Right-handed alpha
Helix 149	AQ5	F	318	334	Right-handed alpha
Helix 150	AQ6	F	349	353	Right-handed 310
Helix 151	AQ7	F	373	385	Right-handed alpha
Helix 152	AQ8	F	395	403	Right-handed alpha
Helix 153	AQ9	F	407	425	Right-handed alpha
Helix 154	AR1	F	448	456	Right-handed alpha
Helix 155	AR2	F	475	479	Right-handed 310
Helix 156	AR3	F	482	499	Right-handed alpha
Helix 157	AR4	F	499	507	Right-handed alpha
Helix 158	AR5	F	523	535	Right-handed alpha
Helix 159	AR6	F	543	550	Right-handed alpha
Helix 160	AR7	F	557	569	Right-handed alpha
Helix 161	AR8	F	578	584	Right-handed alpha
Helix 162	AR9	F	599	610	Right-handed alpha
Helix 163	AS1	F	630	635	Right-handed 310
Helix 164	AS2	F	649	661	Right-handed alpha
Helix 165	AS3	F	672	678	Right-handed alpha
Helix 166	AS4	F	683	706	Right-handed alpha
Helix 167	AS5	F	732	743	Right-handed alpha
Helix 168	AS6	F	748	761	Right-handed alpha

There are 12 sheets in PDB entry 9Y07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	299	304	parallel
Strand 3	A	341	347	parallel
Strand 4	A	240	244	parallel
Strand 5	A	365	368	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	543	first strand
Strand 2	A	572	577	parallel
Strand 3	A	617	623	parallel
Strand 4	A	513	517	parallel
Strand 5	A	641	644	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	299	304	parallel
Strand 3	B	341	347	parallel
Strand 4	B	240	244	parallel
Strand 5	B	365	368	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	543	first strand
Strand 2	B	572	577	parallel
Strand 3	B	617	623	parallel
Strand 4	B	513	517	parallel
Strand 5	B	641	644	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	299	304	parallel
Strand 3	C	341	347	parallel
Strand 4	C	240	244	parallel
Strand 5	C	365	368	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	541	first strand
Strand 2	C	572	576	parallel
Strand 3	C	617	623	parallel
Strand 4	C	513	517	parallel
Strand 5	C	641	644	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	270	first strand
Strand 2	D	299	304	parallel
Strand 3	D	341	347	parallel
Strand 4	D	240	244	parallel
Strand 5	D	365	368	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	543	first strand
Strand 2	D	572	577	parallel
Strand 3	D	617	623	parallel
Strand 4	D	513	517	parallel
Strand 5	D	641	644	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	270	first strand
Strand 2	E	299	304	parallel
Strand 3	E	341	347	parallel
Strand 4	E	240	244	parallel
Strand 5	E	365	368	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	543	first strand
Strand 2	E	572	577	parallel
Strand 3	E	617	623	parallel
Strand 4	E	513	517	parallel
Strand 5	E	641	644	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	270	first strand
Strand 2	F	299	304	parallel
Strand 3	F	341	347	parallel
Strand 4	F	240	244	parallel
Strand 5	F	365	368	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	538	541	first strand
Strand 2	F	572	576	parallel
Strand 3	F	617	623	parallel
Strand 4	F	513	517	parallel
Strand 5	F	641	644	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y07

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y07