Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y09 entry

There are 6 chains in PDB entry 9Y09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 200	PHE 768
B	GLU 200	PHE 768
C	GLU 200	PHE 768
D	GLU 200	PHE 768
E	GLU 200	PHE 768
F	GLU 200	PHE 768

There are172 helices in PDB entry 9Y09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	202	206	Right-handed 310
Helix 2	AA2	A	210	226	Right-handed alpha
Helix 3	AA3	A	226	234	Right-handed alpha
Helix 4	AA4	A	250	262	Right-handed alpha
Helix 5	AA5	A	271	277	Right-handed alpha
Helix 6	AA6	A	280	296	Right-handed alpha
Helix 7	AA7	A	305	310	Right-handed alpha
Helix 8	AA8	A	318	334	Right-handed alpha
Helix 9	AA9	A	336	339	Right-handed 310
Helix 10	AB1	A	349	353	Right-handed 310
Helix 11	AB2	A	354	359	Right-handed 310
Helix 12	AB3	A	373	386	Right-handed alpha
Helix 13	AB4	A	395	403	Right-handed alpha
Helix 14	AB5	A	407	425	Right-handed alpha
Helix 15	AB6	A	448	456	Right-handed alpha
Helix 16	AB7	A	475	479	Right-handed 310
Helix 17	AB8	A	482	499	Right-handed alpha
Helix 18	AB9	A	499	507	Right-handed alpha
Helix 19	AC1	A	523	535	Right-handed alpha
Helix 20	AC2	A	544	550	Right-handed alpha
Helix 21	AC3	A	557	569	Right-handed alpha
Helix 22	AC4	A	578	584	Right-handed alpha
Helix 23	AC5	A	599	610	Right-handed alpha
Helix 24	AC6	A	630	635	Right-handed 310
Helix 25	AC7	A	649	661	Right-handed alpha
Helix 26	AC8	A	672	678	Right-handed alpha
Helix 27	AC9	A	683	707	Right-handed alpha
Helix 28	AD1	A	732	743	Right-handed alpha
Helix 29	AD2	A	748	761	Right-handed alpha
Helix 30	AD3	B	202	206	Right-handed 310
Helix 31	AD4	B	210	226	Right-handed alpha
Helix 32	AD5	B	226	234	Right-handed alpha
Helix 33	AD6	B	250	262	Right-handed alpha
Helix 34	AD7	B	271	277	Right-handed alpha
Helix 35	AD8	B	280	296	Right-handed alpha
Helix 36	AD9	B	305	310	Right-handed alpha
Helix 37	AE1	B	318	334	Right-handed alpha
Helix 38	AE2	B	336	339	Right-handed 310
Helix 39	AE3	B	349	353	Right-handed 310
Helix 40	AE4	B	354	359	Right-handed alpha
Helix 41	AE5	B	373	386	Right-handed alpha
Helix 42	AE6	B	395	403	Right-handed alpha
Helix 43	AE7	B	407	425	Right-handed alpha
Helix 44	AE8	B	448	456	Right-handed alpha
Helix 45	AE9	B	475	479	Right-handed 310
Helix 46	AF1	B	482	499	Right-handed alpha
Helix 47	AF2	B	499	506	Right-handed alpha
Helix 48	AF3	B	523	535	Right-handed alpha
Helix 49	AF4	B	544	550	Right-handed alpha
Helix 50	AF5	B	556	569	Right-handed alpha
Helix 51	AF6	B	578	584	Right-handed alpha
Helix 52	AF7	B	599	610	Right-handed alpha
Helix 53	AF8	B	630	635	Right-handed 310
Helix 54	AF9	B	649	661	Right-handed alpha
Helix 55	AG1	B	671	678	Right-handed alpha
Helix 56	AG2	B	683	707	Right-handed alpha
Helix 57	AG3	B	732	743	Right-handed alpha
Helix 58	AG4	B	748	761	Right-handed alpha
Helix 59	AG5	C	202	206	Right-handed 310
Helix 60	AG6	C	210	226	Right-handed alpha
Helix 61	AG7	C	226	234	Right-handed alpha
Helix 62	AG8	C	250	262	Right-handed alpha
Helix 63	AG9	C	271	277	Right-handed alpha
Helix 64	AH1	C	280	296	Right-handed alpha
Helix 65	AH2	C	305	310	Right-handed alpha
Helix 66	AH3	C	318	334	Right-handed alpha
Helix 67	AH4	C	349	353	Right-handed 310
Helix 68	AH5	C	354	359	Right-handed 310
Helix 69	AH6	C	373	386	Right-handed alpha
Helix 70	AH7	C	395	403	Right-handed alpha
Helix 71	AH8	C	407	425	Right-handed alpha
Helix 72	AH9	C	448	456	Right-handed alpha
Helix 73	AI1	C	475	479	Right-handed 310
Helix 74	AI2	C	482	499	Right-handed alpha
Helix 75	AI3	C	499	506	Right-handed alpha
Helix 76	AI4	C	523	535	Right-handed alpha
Helix 77	AI5	C	544	550	Right-handed alpha
Helix 78	AI6	C	557	569	Right-handed alpha
Helix 79	AI7	C	578	584	Right-handed alpha
Helix 80	AI8	C	599	610	Right-handed alpha
Helix 81	AI9	C	630	635	Right-handed 310
Helix 82	AJ1	C	649	661	Right-handed alpha
Helix 83	AJ2	C	671	678	Right-handed alpha
Helix 84	AJ3	C	683	707	Right-handed alpha
Helix 85	AJ4	C	732	743	Right-handed alpha
Helix 86	AJ5	C	748	761	Right-handed alpha
Helix 87	AJ6	D	202	206	Right-handed 310
Helix 88	AJ7	D	210	226	Right-handed alpha
Helix 89	AJ8	D	226	234	Right-handed alpha
Helix 90	AJ9	D	250	262	Right-handed alpha
Helix 91	AK1	D	271	277	Right-handed alpha
Helix 92	AK2	D	280	296	Right-handed alpha
Helix 93	AK3	D	305	310	Right-handed alpha
Helix 94	AK4	D	318	334	Right-handed alpha
Helix 95	AK5	D	336	339	Right-handed 310
Helix 96	AK6	D	349	353	Right-handed 310
Helix 97	AK7	D	354	359	Right-handed 310
Helix 98	AK8	D	373	386	Right-handed alpha
Helix 99	AK9	D	395	403	Right-handed alpha
Helix 100	AL1	D	407	425	Right-handed alpha
Helix 101	AL2	D	448	456	Right-handed alpha
Helix 102	AL3	D	475	479	Right-handed 310
Helix 103	AL4	D	482	499	Right-handed alpha
Helix 104	AL5	D	499	506	Right-handed alpha
Helix 105	AL6	D	523	535	Right-handed alpha
Helix 106	AL7	D	543	550	Right-handed alpha
Helix 107	AL8	D	557	569	Right-handed alpha
Helix 108	AL9	D	578	584	Right-handed alpha
Helix 109	AM1	D	599	610	Right-handed alpha
Helix 110	AM2	D	630	635	Right-handed 310
Helix 111	AM3	D	649	661	Right-handed alpha
Helix 112	AM4	D	672	678	Right-handed alpha
Helix 113	AM5	D	683	707	Right-handed alpha
Helix 114	AM6	D	732	743	Right-handed alpha
Helix 115	AM7	D	748	761	Right-handed alpha
Helix 116	AM8	E	202	206	Right-handed 310
Helix 117	AM9	E	210	226	Right-handed alpha
Helix 118	AN1	E	226	234	Right-handed alpha
Helix 119	AN2	E	250	262	Right-handed alpha
Helix 120	AN3	E	271	277	Right-handed alpha
Helix 121	AN4	E	280	296	Right-handed alpha
Helix 122	AN5	E	305	310	Right-handed alpha
Helix 123	AN6	E	318	334	Right-handed alpha
Helix 124	AN7	E	349	353	Right-handed 310
Helix 125	AN8	E	354	359	Right-handed 310
Helix 126	AN9	E	373	386	Right-handed alpha
Helix 127	AO1	E	395	403	Right-handed alpha
Helix 128	AO2	E	407	425	Right-handed alpha
Helix 129	AO3	E	448	456	Right-handed alpha
Helix 130	AO4	E	475	479	Right-handed 310
Helix 131	AO5	E	482	499	Right-handed alpha
Helix 132	AO6	E	499	506	Right-handed alpha
Helix 133	AO7	E	523	535	Right-handed alpha
Helix 134	AO8	E	544	550	Right-handed alpha
Helix 135	AO9	E	556	569	Right-handed alpha
Helix 136	AP1	E	578	584	Right-handed alpha
Helix 137	AP2	E	599	610	Right-handed alpha
Helix 138	AP3	E	630	635	Right-handed 310
Helix 139	AP4	E	649	661	Right-handed alpha
Helix 140	AP5	E	671	678	Right-handed alpha
Helix 141	AP6	E	683	707	Right-handed alpha
Helix 142	AP7	E	732	743	Right-handed alpha
Helix 143	AP8	E	748	761	Right-handed alpha
Helix 144	AP9	F	202	206	Right-handed 310
Helix 145	AQ1	F	210	226	Right-handed alpha
Helix 146	AQ2	F	226	234	Right-handed alpha
Helix 147	AQ3	F	250	262	Right-handed alpha
Helix 148	AQ4	F	271	277	Right-handed alpha
Helix 149	AQ5	F	280	296	Right-handed alpha
Helix 150	AQ6	F	305	310	Right-handed alpha
Helix 151	AQ7	F	318	334	Right-handed alpha
Helix 152	AQ8	F	336	339	Right-handed 310
Helix 153	AQ9	F	349	353	Right-handed 310
Helix 154	AR1	F	354	359	Right-handed 310
Helix 155	AR2	F	373	386	Right-handed alpha
Helix 156	AR3	F	395	403	Right-handed alpha
Helix 157	AR4	F	407	425	Right-handed alpha
Helix 158	AR5	F	448	456	Right-handed alpha
Helix 159	AR6	F	475	479	Right-handed 310
Helix 160	AR7	F	482	499	Right-handed alpha
Helix 161	AR8	F	499	506	Right-handed alpha
Helix 162	AR9	F	523	535	Right-handed alpha
Helix 163	AS1	F	544	550	Right-handed alpha
Helix 164	AS2	F	556	569	Right-handed alpha
Helix 165	AS3	F	578	584	Right-handed alpha
Helix 166	AS4	F	599	610	Right-handed alpha
Helix 167	AS5	F	630	635	Right-handed 310
Helix 168	AS6	F	649	661	Right-handed alpha
Helix 169	AS7	F	671	678	Right-handed alpha
Helix 170	AS8	F	683	707	Right-handed alpha
Helix 171	AS9	F	732	743	Right-handed alpha
Helix 172	AT1	F	748	761	Right-handed alpha

There are 12 sheets in PDB entry 9Y09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	299	304	parallel
Strand 3	A	341	347	parallel
Strand 4	A	240	244	parallel
Strand 5	A	365	368	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	538	543	anti-parallel
Strand 3	A	572	577	parallel
Strand 4	A	617	623	parallel
Strand 5	A	513	517	parallel
Strand 6	A	641	644	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	299	304	parallel
Strand 3	B	341	347	parallel
Strand 4	B	240	244	parallel
Strand 5	B	365	368	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	470	first strand
Strand 2	B	538	543	anti-parallel
Strand 3	B	572	577	parallel
Strand 4	B	617	623	parallel
Strand 5	B	513	517	parallel
Strand 6	B	641	644	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	299	304	parallel
Strand 3	C	341	347	parallel
Strand 4	C	240	244	parallel
Strand 5	C	365	368	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	543	first strand
Strand 2	C	572	577	parallel
Strand 3	C	617	623	parallel
Strand 4	C	513	517	parallel
Strand 5	C	641	644	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	270	first strand
Strand 2	D	299	304	parallel
Strand 3	D	341	347	parallel
Strand 4	D	240	244	parallel
Strand 5	D	365	368	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	470	first strand
Strand 2	D	538	541	anti-parallel
Strand 3	D	572	576	parallel
Strand 4	D	617	623	parallel
Strand 5	D	513	517	parallel
Strand 6	D	641	644	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	270	first strand
Strand 2	E	299	304	parallel
Strand 3	E	341	347	parallel
Strand 4	E	240	244	parallel
Strand 5	E	365	368	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	469	470	first strand
Strand 2	E	538	543	anti-parallel
Strand 3	E	572	577	parallel
Strand 4	E	617	623	parallel
Strand 5	E	513	517	parallel
Strand 6	E	641	644	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	270	first strand
Strand 2	F	299	304	parallel
Strand 3	F	341	347	parallel
Strand 4	F	240	244	parallel
Strand 5	F	365	368	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	469	470	first strand
Strand 2	F	538	543	anti-parallel
Strand 3	F	572	577	parallel
Strand 4	F	617	623	parallel
Strand 5	F	513	517	parallel
Strand 6	F	641	644	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y09

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y09