Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y0L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y0L entry

There are 15 chains in PDB entry 9Y0L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 8	ALA 257
B	TYR 6	ILE 232
C	ARG 3	LYS 242
D	SER 2	THR 234
E	ASP 9	SER 246
F	ASN 4	MET 237
G	ALA 6	LYS 250
H	THR 1	VAL 244
I	LEU -38	LYS 190
J	TYR 7	LYS 214
K	ASP 2	VAL 195
L	SER -52	ILE 187
M	ARG 29	LEU 235
N	THR 2	PRO 243
e	ASN 4	ILE 124

There are 91 helices in PDB entry 9Y0L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	35	Right-handed alpha
Helix 2	AA2	A	68	72	Right-handed 310
Helix 3	AA3	A	89	112	Right-handed alpha
Helix 4	AA4	A	116	134	Right-handed alpha
Helix 5	AA5	A	180	194	Right-handed alpha
Helix 6	AA6	A	200	221	Right-handed alpha
Helix 7	AA7	A	225	229	Right-handed 310
Helix 8	AA8	A	245	257	Right-handed alpha
Helix 9	AA9	B	19	31	Right-handed alpha
Helix 10	AB1	B	79	102	Right-handed alpha
Helix 11	AB2	B	106	124	Right-handed alpha
Helix 12	AB3	B	166	177	Right-handed alpha
Helix 13	AB4	B	183	198	Right-handed alpha
Helix 14	AB5	B	223	232	Right-handed alpha
Helix 15	AB6	C	18	29	Right-handed alpha
Helix 16	AB7	C	79	102	Right-handed alpha
Helix 17	AB8	C	106	124	Right-handed alpha
Helix 18	AB9	C	167	178	Right-handed alpha
Helix 19	AC1	C	184	201	Right-handed alpha
Helix 20	AC2	C	217	221	Right-handed 310
Helix 21	AC3	C	228	241	Right-handed alpha
Helix 22	AC4	D	16	28	Right-handed alpha
Helix 23	AC5	D	76	99	Right-handed alpha
Helix 24	AC6	D	103	119	Right-handed alpha
Helix 25	AC7	D	164	176	Right-handed alpha
Helix 26	AC8	D	181	195	Right-handed alpha
Helix 27	AC9	D	200	204	Right-handed 310
Helix 28	AD1	D	218	234	Right-handed alpha
Helix 29	AD2	E	21	31	Right-handed alpha
Helix 30	AD3	E	81	103	Right-handed alpha
Helix 31	AD4	E	108	121	Right-handed alpha
Helix 32	AD5	E	175	187	Right-handed alpha
Helix 33	AD6	E	192	206	Right-handed alpha
Helix 34	AD7	E	233	243	Right-handed alpha
Helix 35	AD8	F	20	31	Right-handed alpha
Helix 36	AD9	F	77	99	Right-handed alpha
Helix 37	AE1	F	104	122	Right-handed alpha
Helix 38	AE2	F	163	174	Right-handed alpha
Helix 39	AE3	F	174	179	Right-handed alpha
Helix 40	AE4	F	182	199	Right-handed alpha
Helix 41	AE5	F	224	237	Right-handed alpha
Helix 42	AE6	G	7	11	Right-handed 310
Helix 43	AE7	G	21	33	Right-handed alpha
Helix 44	AE8	G	53	57	Right-handed 310
Helix 45	AE9	G	83	106	Right-handed alpha
Helix 46	AF1	G	110	124	Right-handed alpha
Helix 47	AF2	G	171	180	Right-handed alpha
Helix 48	AF3	G	188	204	Right-handed alpha
Helix 49	AF4	G	209	213	Right-handed 310
Helix 50	AF5	G	233	250	Right-handed alpha
Helix 51	AF6	H	48	70	Right-handed alpha
Helix 52	AF7	H	120	124	Right-handed 310
Helix 53	AF8	H	128	143	Right-handed alpha
Helix 54	AF9	H	186	194	Right-handed alpha
Helix 55	AG1	H	202	220	Right-handed alpha
Helix 56	AG2	I	-37	-28	Right-handed alpha
Helix 57	AG3	I	-21	-11	Right-handed alpha
Helix 58	AG4	I	48	71	Right-handed alpha
Helix 59	AG5	I	75	90	Right-handed alpha
Helix 60	AG6	I	130	141	Right-handed alpha
Helix 61	AG7	I	147	166	Right-handed alpha
Helix 62	AG8	J	58	81	Right-handed alpha
Helix 63	AG9	J	85	100	Right-handed alpha
Helix 64	AH1	J	155	166	Right-handed alpha
Helix 65	AH2	J	172	184	Right-handed alpha
Helix 66	AH3	K	50	73	Right-handed alpha
Helix 67	AH4	K	77	96	Right-handed alpha
Helix 68	AH5	K	135	147	Right-handed alpha
Helix 69	AH6	K	152	171	Right-handed alpha
Helix 70	AH7	L	-51	-41	Right-handed alpha
Helix 71	AH8	L	-21	-19	Right-handed 310
Helix 72	AH9	L	-18	-9	Right-handed alpha
Helix 73	AI1	L	48	70	Right-handed alpha
Helix 74	AI2	L	75	90	Right-handed alpha
Helix 75	AI3	L	131	142	Right-handed alpha
Helix 76	AI4	L	148	164	Right-handed alpha
Helix 77	AI5	M	85	108	Right-handed alpha
Helix 78	AI6	M	112	127	Right-handed alpha
Helix 79	AI7	M	169	182	Right-handed alpha
Helix 80	AI8	M	194	212	Right-handed alpha
Helix 81	AI9	N	57	78	Right-handed alpha
Helix 82	AJ1	N	81	85	Right-handed 310
Helix 83	AJ2	N	87	106	Right-handed alpha
Helix 84	AJ3	N	126	130	Right-handed 310
Helix 85	AJ4	N	180	193	Right-handed alpha
Helix 86	AJ5	N	198	216	Right-handed alpha
Helix 87	AJ6	e	32	39	Right-handed alpha
Helix 88	AJ7	e	41	56	Right-handed alpha
Helix 89	AJ8	e	57	74	Right-handed alpha
Helix 90	AJ9	e	84	91	Right-handed alpha
Helix 91	AK1	e	113	123	Right-handed alpha

There are 42 sheets in PDB entry 9Y0L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	39	43	anti-parallel
Strand 3	A	47	52	anti-parallel
Strand 4	A	230	235	anti-parallel
Strand 5	A	242	243	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	83	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	142	143	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	149	first strand
Strand 2	A	155	159	anti-parallel
Strand 3	A	167	169	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	43	49	anti-parallel
Strand 4	B	208	214	anti-parallel
Strand 5	B	220	221	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	72	75	anti-parallel
Strand 3	B	134	140	anti-parallel
Strand 4	B	143	149	anti-parallel
Strand 5	B	155	157	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	161	164	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	210	211	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	69	first strand
Strand 2	C	72	75	anti-parallel
Strand 3	C	137	140	anti-parallel
Strand 4	C	144	147	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	216	first strand
Strand 2	C	223	226	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	32	35	anti-parallel
Strand 3	D	41	45	anti-parallel
Strand 4	D	207	209	anti-parallel
Strand 5	D	214	216	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	132	136	anti-parallel
Strand 3	D	142	146	anti-parallel
Strand 4	D	154	156	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	40	first strand
Strand 2	E	169	172	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	220	223	anti-parallel
Strand 3	E	229	231	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	71	first strand
Strand 2	E	74	77	anti-parallel
Strand 3	E	146	149	anti-parallel
Strand 4	E	152	155	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	48	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	157	159	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	67	first strand
Strand 2	F	70	73	anti-parallel
Strand 3	F	133	137	anti-parallel
Strand 4	F	141	146	anti-parallel
Strand 5	F	152	155	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	212	215	first strand
Strand 2	F	218	222	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	168	first strand
Strand 2	G	37	41	anti-parallel
Strand 3	G	45	51	anti-parallel
Strand 4	G	216	222	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	72	first strand
Strand 2	G	76	79	anti-parallel
Strand 3	G	138	144	anti-parallel
Strand 4	G	148	154	anti-parallel
Strand 5	G	160	163	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	117	first strand
Strand 2	H	237	243	anti-parallel
Strand 3	H	228	234	anti-parallel
Strand 4	H	11	16	anti-parallel
Strand 5	H	3	8	anti-parallel
Strand 6	H	179	182	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	38	first strand
Strand 2	H	41	44	anti-parallel
Strand 3	H	151	157	anti-parallel
Strand 4	H	161	167	anti-parallel
Strand 5	H	173	176	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	127	first strand
Strand 2	I	3	8	anti-parallel
Strand 3	I	11	17	anti-parallel
Strand 4	I	173	178	anti-parallel
Strand 5	I	184	186	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	38	first strand
Strand 2	I	41	47	anti-parallel
Strand 3	I	96	98	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	38	first strand
Strand 2	I	41	47	anti-parallel
Strand 3	I	101	104	anti-parallel
Strand 4	I	107	110	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	150	153	first strand
Strand 2	J	11	15	anti-parallel
Strand 3	J	21	26	anti-parallel
Strand 4	J	198	204	anti-parallel
Strand 5	J	207	213	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	30	first strand
Strand 2	J	36	38	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	44	48	first strand
Strand 2	J	51	54	anti-parallel
Strand 3	J	110	117	anti-parallel
Strand 4	J	129	136	anti-parallel
Strand 5	J	144	145	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	129	132	first strand
Strand 2	K	4	9	anti-parallel
Strand 3	K	12	17	anti-parallel
Strand 4	K	177	184	anti-parallel
Strand 5	K	187	194	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	39	first strand
Strand 2	K	43	48	anti-parallel
Strand 3	K	101	102	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	39	first strand
Strand 2	K	43	48	anti-parallel
Strand 3	K	105	108	anti-parallel
Strand 4	K	112	117	anti-parallel
Strand 5	K	125	126	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	125	128	first strand
Strand 2	L	3	7	anti-parallel
Strand 3	L	12	16	anti-parallel
Strand 4	L	175	180	anti-parallel
Strand 5	L	183	186	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	34	36	first strand
Strand 2	L	41	44	anti-parallel
Strand 3	L	102	105	anti-parallel
Strand 4	L	108	110	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	98	100	first strand
Strand 2	L	113	115	anti-parallel
Strand 3	L	120	121	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	41	43	first strand
Strand 2	M	163	165	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	53	54	first strand
Strand 2	M	220	221	anti-parallel
Strand 3	M	234	235	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	58	first strand
Strand 2	M	63	65	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	72	75	first strand
Strand 2	M	78	82	anti-parallel
Strand 3	M	136	141	anti-parallel
Strand 4	M	147	151	anti-parallel
Strand 5	M	159	160	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	224	226	first strand
Strand 2	M	229	231	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	7	8	first strand
Strand 2	N	30	31	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	176	177	first strand
Strand 2	N	13	17	anti-parallel
Strand 3	N	20	25	anti-parallel
Strand 4	N	223	230	anti-parallel
Strand 5	N	233	241	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	44	47	first strand
Strand 2	N	50	53	anti-parallel
Strand 3	N	114	118	anti-parallel
Strand 4	N	159	164	anti-parallel
Strand 5	N	170	172	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y0L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y0L