Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y43

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y43 entry

There are 2 chains in PDB entry 9Y43 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 704
B	MET 1	SER 703

There are 55 helices in PDB entry 9Y43. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	12	Right-handed alpha
Helix 2	AA2	A	20	31	Right-handed alpha
Helix 3	AA3	A	86	98	Right-handed alpha
Helix 4	AA4	A	99	101	Right-handed 310
Helix 5	AA5	A	142	147	Right-handed alpha
Helix 6	AA6	A	157	168	Right-handed alpha
Helix 7	AA7	A	170	175	Right-handed alpha
Helix 8	AA8	A	184	202	Right-handed alpha
Helix 9	AA9	A	249	254	Right-handed alpha
Helix 10	AB1	A	269	280	Right-handed alpha
Helix 11	AB2	A	296	300	Right-handed 310
Helix 12	AB3	A	305	309	Right-handed 310
Helix 13	AB4	A	321	323	Right-handed 310
Helix 14	AB5	A	324	336	Right-handed alpha
Helix 15	AB6	A	347	351	Right-handed 310
Helix 16	AB7	A	352	368	Right-handed alpha
Helix 17	AB8	A	411	422	Right-handed alpha
Helix 18	AB9	A	440	451	Right-handed alpha
Helix 19	AC1	A	466	480	Right-handed alpha
Helix 20	AC2	A	493	500	Right-handed alpha
Helix 21	AC3	A	500	505	Right-handed alpha
Helix 22	AC4	A	510	522	Right-handed alpha
Helix 23	AC5	A	528	542	Right-handed alpha
Helix 24	AC6	A	556	570	Right-handed alpha
Helix 25	AC7	A	578	589	Right-handed alpha
Helix 26	AC8	A	608	621	Right-handed alpha
Helix 27	AC9	A	642	654	Right-handed alpha
Helix 28	AD1	A	665	677	Right-handed alpha
Helix 29	AD2	A	685	703	Right-handed alpha
Helix 30	AD3	B	3	14	Right-handed alpha
Helix 31	AD4	B	20	31	Right-handed alpha
Helix 32	AD5	B	43	53	Right-handed alpha
Helix 33	AD6	B	82	100	Right-handed alpha
Helix 34	AD7	B	140	145	Right-handed alpha
Helix 35	AD8	B	157	168	Right-handed alpha
Helix 36	AD9	B	171	176	Right-handed alpha
Helix 37	AE1	B	186	202	Right-handed alpha
Helix 38	AE2	B	249	254	Right-handed alpha
Helix 39	AE3	B	269	280	Right-handed alpha
Helix 40	AE4	B	321	323	Right-handed 310
Helix 41	AE5	B	324	336	Right-handed alpha
Helix 42	AE6	B	347	350	Right-handed 310
Helix 43	AE7	B	351	368	Right-handed alpha
Helix 44	AE8	B	411	422	Right-handed alpha
Helix 45	AE9	B	440	451	Right-handed alpha
Helix 46	AF1	B	466	480	Right-handed alpha
Helix 47	AF2	B	493	505	Right-handed alpha
Helix 48	AF3	B	510	522	Right-handed alpha
Helix 49	AF4	B	528	542	Right-handed alpha
Helix 50	AF5	B	556	570	Right-handed alpha
Helix 51	AF6	B	578	589	Right-handed alpha
Helix 52	AF7	B	608	622	Right-handed alpha
Helix 53	AF8	B	642	654	Right-handed alpha
Helix 54	AF9	B	665	677	Right-handed alpha
Helix 55	AG1	B	685	703	Right-handed alpha

There are 16 sheets in PDB entry 9Y43. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	A	227	230	anti-parallel
Strand 3	A	206	217	anti-parallel
Strand 4	A	118	127	anti-parallel
Strand 5	A	131	138	anti-parallel
Strand 6	A	149	153	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	A	227	230	anti-parallel
Strand 3	A	206	217	anti-parallel
Strand 4	A	220	223	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	108	111	anti-parallel
Strand 3	A	59	61	anti-parallel
Strand 4	A	76	77	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	290	first strand
Strand 2	A	257	261	parallel
Strand 3	A	315	318	parallel
Strand 4	A	339	342	parallel
Strand 5	A	371	373	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	379	382	anti-parallel
Strand 3	A	427	432	anti-parallel
Strand 4	A	405	409	parallel
Strand 5	A	456	461	parallel
Strand 6	A	485	489	parallel
Strand 7	A	524	526	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	A	549	554	parallel
Strand 3	A	601	602	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	A	549	554	parallel
Strand 3	A	627	631	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	661	first strand
Strand 2	A	682	683	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	41	first strand
Strand 2	B	107	112	anti-parallel
Strand 3	B	58	63	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	131	138	anti-parallel
Strand 3	B	118	127	anti-parallel
Strand 4	B	206	216	anti-parallel
Strand 5	B	221	223	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	131	138	anti-parallel
Strand 3	B	118	127	anti-parallel
Strand 4	B	206	216	anti-parallel
Strand 5	B	227	230	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	290	first strand
Strand 2	B	257	261	parallel
Strand 3	B	315	318	parallel
Strand 4	B	339	342	parallel
Strand 5	B	371	373	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	388	first strand
Strand 2	B	380	382	anti-parallel
Strand 3	B	427	432	anti-parallel
Strand 4	B	405	409	parallel
Strand 5	B	456	461	parallel
Strand 6	B	485	489	parallel
Strand 7	B	524	526	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	574	first strand
Strand 2	B	549	554	parallel
Strand 3	B	601	602	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	574	first strand
Strand 2	B	549	554	parallel
Strand 3	B	627	630	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	660	661	first strand
Strand 2	B	682	683	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y43

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y43