Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y48 entry

There is 1 chain in PDB entry 9Y48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 62GLU 951
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9Y48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
199 205Right-handed alpha
Helix 2
AA2
A
380 390Right-handed alpha
Helix 3
AA3
A
449 453Right-handed 310
Helix 4
AA4
A
454 460Right-handed 310
Helix 5
AA5
A
474 483Right-handed alpha
Helix 6
AA6
A
539 544Right-handed alpha
Helix 7
AA7
A
614 617Right-handed 310
Helix 8
AA8
A
723 725Right-handed 310
Helix 9
AA9
A
760 766Right-handed alpha
Helix 10
AB1
A
767 770Right-handed 310
Helix 11
AB2
A
860 864Right-handed 310
Helix 12
AB3
A
926 936Right-handed alpha
Helix 13
AB4
A
944 950Right-handed alpha
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There are 14 sheets in PDB entry 9Y48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 75first strand
Strand 2
A
880 885anti-parallel
Strand 3
A
871 875anti-parallel
Strand 4
A
865 866anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 86first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
100 104anti-parallel
Strand 4
A
110 114anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 127first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
140 145anti-parallel
Strand 4
A
151 156anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 166first strand
Strand 2
A
172 177anti-parallel
Strand 3
A
182 186anti-parallel
Strand 4
A
191 192anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
226 230anti-parallel
Strand 3
A
235 239anti-parallel
Strand 4
A
244 249anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 279first strand
Strand 2
A
285 290anti-parallel
Strand 3
A
295 299anti-parallel
Strand 4
A
305 309anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 341first strand
Strand 2
A
347 354anti-parallel
Strand 3
A
365 372anti-parallel
Strand 4
A
393 397anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 411first strand
Strand 2
A
426 431anti-parallel
Strand 3
A
436 440anti-parallel
Strand 4
A
446 447anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 473first strand
Strand 2
A
506 514anti-parallel
Strand 3
A
518 523anti-parallel
Strand 4
A
534 538anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 557first strand
Strand 2
A
562 567anti-parallel
Strand 3
A
572 579anti-parallel
Strand 4
A
623 631anti-parallel
Strand 5
A
610 612anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 643first strand
Strand 2
A
648 653anti-parallel
Strand 3
A
657 662anti-parallel
Strand 4
A
667 673anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
685 694first strand
Strand 2
A
701 709anti-parallel
Strand 3
A
713 721anti-parallel
Strand 4
A
727 736anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
745 750first strand
Strand 2
A
775 780anti-parallel
Strand 3
A
784 788anti-parallel
Strand 4
A
795 799anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
804 815first strand
Strand 2
A
821 831anti-parallel
Strand 3
A
835 840anti-parallel
Strand 4
A
846 851anti-parallel
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