Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y4J entry

There are 3 chains in PDB entry 9Y4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 306GLU 1017
B
 C 1 A 13
C
 U 1 G 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9Y4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
309 317Right-handed alpha
Helix 2
AA2
A
334 353Right-handed alpha
Helix 3
AA3
A
365 375Right-handed alpha
Helix 4
AA4
A
377 382Right-handed alpha
Helix 5
AA5
A
399 407Right-handed alpha
Helix 6
AA6
A
414 422Right-handed alpha
Helix 7
AA7
A
433 437Right-handed 310
Helix 8
AA8
A
445 448Right-handed 310
Helix 9
AA9
A
452 473Right-handed alpha
Helix 10
AB1
A
498 513Right-handed alpha
Helix 11
AB2
A
524 532Right-handed alpha
Helix 12
AB3
A
548 565Right-handed alpha
Helix 13
AB4
A
575 593Right-handed alpha
Helix 14
AB5
A
594 617Right-handed alpha
Helix 15
AB6
A
618 637Right-handed alpha
Helix 16
AB7
A
670 682Right-handed alpha
Helix 17
AB8
A
683 692Right-handed alpha
Helix 18
AB9
A
693 697Right-handed 310
Helix 19
AC1
A
698 712Right-handed alpha
Helix 20
AC2
A
727 740Right-handed alpha
Helix 21
AC3
A
741 747Right-handed alpha
Helix 22
AC4
A
767 779Right-handed alpha
Helix 23
AC5
A
812 821Right-handed alpha
Helix 24
AC6
A
839 863Right-handed alpha
Helix 25
AC7
A
865 886Right-handed alpha
Helix 26
AC8
A
887 894Right-handed alpha
Helix 27
AC9
A
899 901Right-handed 310
Helix 28
AD1
A
932 937Right-handed alpha
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There are 5 sheets in PDB entry 9Y4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 390first strand
Strand 2
A
409 413parallel
Strand 3
A
359 363parallel
Strand 4
A
439 443parallel
Strand 5
A
483 488parallel
Strand 6
A
325 328parallel
Strand 7
A
517 520parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 542first strand
Strand 2
A
829 835parallel
Strand 3
A
803 807parallel
Strand 4
A
721 724parallel
Strand 5
A
787 790parallel
Strand 6
A
751 754parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 916first strand
Strand 2
A
903 907anti-parallel
Strand 3
A
987 991anti-parallel
Strand 4
A
997 998anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 923first strand
Strand 2
A
927 930anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
939 941first strand
Strand 2
A
959 962anti-parallel
Strand 3
A
967 974anti-parallel
Strand 4
A
977 982anti-parallel
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