Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y4V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y4V entry

There are 2 chains in PDB entry 9Y4V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10LEU 419
B
 ASP 8LEU 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9Y4V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 30Right-handed 310
Helix 2
AA2
A
31 45Right-handed alpha
Helix 3
AA3
A
55 60Right-handed alpha
Helix 4
AA4
A
67 84Right-handed alpha
Helix 5
AA5
A
104 112Right-handed 310
Helix 6
AA6
A
118 137Right-handed alpha
Helix 7
AA7
A
150 156Right-handed 310
Helix 8
AA8
A
166 185Right-handed alpha
Helix 9
AA9
A
196 201Right-handed alpha
Helix 10
AB1
A
207 214Right-handed alpha
Helix 11
AB2
A
227 233Right-handed alpha
Helix 12
AB3
A
236 241Right-handed alpha
Helix 13
AB4
A
241 254Right-handed alpha
Helix 14
AB5
A
274 276Right-handed 310
Helix 15
AB6
A
277 291Right-handed alpha
Helix 16
AB7
A
314 320Right-handed 310
Helix 17
AB8
A
330 344Right-handed alpha
Helix 18
AB9
A
369 373Right-handed 310
Helix 19
AC1
A
376 388Right-handed alpha
Helix 20
AC2
A
397 401Right-handed alpha
Helix 21
AC3
A
402 409Right-handed alpha
Helix 22
AC4
B
22 30Right-handed 310
Helix 23
AC5
B
31 45Right-handed alpha
Helix 24
AC6
B
55 60Right-handed alpha
Helix 25
AC7
B
67 84Right-handed alpha
Helix 26
AC8
B
104 112Right-handed 310
Helix 27
AC9
B
118 137Right-handed alpha
Helix 28
AD1
B
150 155Right-handed 310
Helix 29
AD2
B
166 185Right-handed alpha
Helix 30
AD3
B
196 201Right-handed alpha
Helix 31
AD4
B
207 214Right-handed alpha
Helix 32
AD5
B
227 233Right-handed alpha
Helix 33
AD6
B
236 241Right-handed alpha
Helix 34
AD7
B
241 253Right-handed alpha
Helix 35
AD8
B
274 276Right-handed 310
Helix 36
AD9
B
277 291Right-handed alpha
Helix 37
AE1
B
314 320Right-handed 310
Helix 38
AE2
B
330 344Right-handed alpha
Helix 39
AE3
B
368 373Right-handed alpha
Helix 40
AE4
B
376 388Right-handed alpha
Helix 41
AE5
B
398 401Right-handed 310
Helix 42
AE6
B
402 409Right-handed alpha
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There are 6 sheets in PDB entry 9Y4V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 148first strand
Strand 2
A
87 93parallel
Strand 3
A
49 52parallel
Strand 4
A
12 16parallel
Strand 5
A
295 300parallel
Strand 6
A
261 266parallel
Strand 7
A
218 222parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
100 101anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 396first strand
Strand 2
A
354 358parallel
Strand 3
A
413 415parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 146first strand
Strand 2
B
87 91parallel
Strand 3
B
49 52parallel
Strand 4
B
12 16parallel
Strand 5
B
295 300parallel
Strand 6
B
261 266parallel
Strand 7
B
218 222parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
100 101anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 396first strand
Strand 2
B
354 358parallel
Strand 3
B
413 415parallel
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