Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y5M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y5M entry

There are 6 chains in PDB entry 9Y5M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 375	PHE 947
B	HIS 391	ASP 949
C	LEU 375	ASP 949
D	THR 390	ASP 949
E	LEU 375	ASP 949
F	HIS 391	ASP 949

There are147 helices in PDB entry 9Y5M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	376	408	Right-handed alpha
Helix 2	AA2	A	413	423	Right-handed alpha
Helix 3	AA3	A	431	448	Right-handed alpha
Helix 4	AA4	A	452	466	Right-handed alpha
Helix 5	AA5	A	479	491	Right-handed alpha
Helix 6	AA6	A	494	512	Right-handed alpha
Helix 7	AA7	A	528	541	Right-handed alpha
Helix 8	AA8	A	555	560	Right-handed alpha
Helix 9	AA9	A	570	581	Right-handed alpha
Helix 10	AB1	A	591	595	Right-handed 310
Helix 11	AB2	A	602	612	Right-handed alpha
Helix 12	AB3	A	612	617	Right-handed alpha
Helix 13	AB4	A	646	653	Right-handed alpha
Helix 14	AB5	A	662	673	Right-handed alpha
Helix 15	AB6	A	673	683	Right-handed alpha
Helix 16	AB7	A	692	703	Right-handed alpha
Helix 17	AB8	A	709	729	Right-handed alpha
Helix 18	AB9	A	738	741	Right-handed 310
Helix 19	AC1	A	742	747	Right-handed alpha
Helix 20	AC2	A	807	829	Right-handed alpha
Helix 21	AC3	A	856	870	Right-handed alpha
Helix 22	AC4	A	894	906	Right-handed alpha
Helix 23	AC5	A	916	921	Right-handed alpha
Helix 24	AC6	A	922	923	Right-handed 310
Helix 25	AC7	A	924	928	Right-handed 310
Helix 26	AC8	A	938	947	Right-handed alpha
Helix 27	AC9	B	392	408	Right-handed alpha
Helix 28	AD1	B	412	425	Right-handed alpha
Helix 29	AD2	B	431	446	Right-handed alpha
Helix 30	AD3	B	452	468	Right-handed alpha
Helix 31	AD4	B	479	491	Right-handed alpha
Helix 32	AD5	B	494	512	Right-handed alpha
Helix 33	AD6	B	530	541	Right-handed alpha
Helix 34	AD7	B	555	560	Right-handed alpha
Helix 35	AD8	B	570	581	Right-handed alpha
Helix 36	AD9	B	591	595	Right-handed 310
Helix 37	AE1	B	602	611	Right-handed alpha
Helix 38	AE2	B	612	617	Right-handed alpha
Helix 39	AE3	B	646	653	Right-handed alpha
Helix 40	AE4	B	662	673	Right-handed alpha
Helix 41	AE5	B	673	683	Right-handed alpha
Helix 42	AE6	B	692	703	Right-handed alpha
Helix 43	AE7	B	709	729	Right-handed alpha
Helix 44	AE8	B	738	741	Right-handed 310
Helix 45	AE9	B	742	747	Right-handed alpha
Helix 46	AF1	B	807	829	Right-handed alpha
Helix 47	AF2	B	853	855	Right-handed 310
Helix 48	AF3	B	856	870	Right-handed alpha
Helix 49	AF4	B	894	905	Right-handed alpha
Helix 50	AF5	B	916	922	Right-handed alpha
Helix 51	AF6	B	938	947	Right-handed alpha
Helix 52	AF7	C	376	407	Right-handed alpha
Helix 53	AF8	C	412	423	Right-handed alpha
Helix 54	AF9	C	431	448	Right-handed alpha
Helix 55	AG1	C	452	467	Right-handed alpha
Helix 56	AG2	C	479	491	Right-handed alpha
Helix 57	AG3	C	494	512	Right-handed alpha
Helix 58	AG4	C	528	541	Right-handed alpha
Helix 59	AG5	C	555	560	Right-handed alpha
Helix 60	AG6	C	570	581	Right-handed alpha
Helix 61	AG7	C	602	612	Right-handed alpha
Helix 62	AG8	C	612	617	Right-handed alpha
Helix 63	AG9	C	646	653	Right-handed alpha
Helix 64	AH1	C	662	673	Right-handed alpha
Helix 65	AH2	C	673	682	Right-handed alpha
Helix 66	AH3	C	692	703	Right-handed alpha
Helix 67	AH4	C	709	729	Right-handed alpha
Helix 68	AH5	C	738	741	Right-handed 310
Helix 69	AH6	C	742	747	Right-handed alpha
Helix 70	AH7	C	807	829	Right-handed alpha
Helix 71	AH8	C	856	870	Right-handed alpha
Helix 72	AH9	C	894	906	Right-handed alpha
Helix 73	AI1	C	916	922	Right-handed alpha
Helix 74	AI2	C	938	947	Right-handed alpha
Helix 75	AI3	D	391	408	Right-handed alpha
Helix 76	AI4	D	412	424	Right-handed alpha
Helix 77	AI5	D	431	448	Right-handed alpha
Helix 78	AI6	D	452	468	Right-handed alpha
Helix 79	AI7	D	479	491	Right-handed alpha
Helix 80	AI8	D	494	512	Right-handed alpha
Helix 81	AI9	D	530	541	Right-handed alpha
Helix 82	AJ1	D	555	560	Right-handed alpha
Helix 83	AJ2	D	570	581	Right-handed alpha
Helix 84	AJ3	D	592	595	Right-handed 310
Helix 85	AJ4	D	602	611	Right-handed alpha
Helix 86	AJ5	D	612	617	Right-handed alpha
Helix 87	AJ6	D	646	653	Right-handed alpha
Helix 88	AJ7	D	662	673	Right-handed alpha
Helix 89	AJ8	D	673	683	Right-handed alpha
Helix 90	AJ9	D	692	703	Right-handed alpha
Helix 91	AK1	D	709	729	Right-handed alpha
Helix 92	AK2	D	742	747	Right-handed alpha
Helix 93	AK3	D	807	829	Right-handed alpha
Helix 94	AK4	D	853	855	Right-handed 310
Helix 95	AK5	D	856	870	Right-handed alpha
Helix 96	AK6	D	894	905	Right-handed alpha
Helix 97	AK7	D	916	922	Right-handed alpha
Helix 98	AK8	D	938	947	Right-handed alpha
Helix 99	AK9	E	376	408	Right-handed alpha
Helix 100	AL1	E	415	425	Right-handed alpha
Helix 101	AL2	E	431	448	Right-handed alpha
Helix 102	AL3	E	452	467	Right-handed alpha
Helix 103	AL4	E	479	490	Right-handed alpha
Helix 104	AL5	E	494	512	Right-handed alpha
Helix 105	AL6	E	530	541	Right-handed alpha
Helix 106	AL7	E	555	560	Right-handed alpha
Helix 107	AL8	E	570	581	Right-handed alpha
Helix 108	AL9	E	592	595	Right-handed 310
Helix 109	AM1	E	602	612	Right-handed alpha
Helix 110	AM2	E	612	617	Right-handed alpha
Helix 111	AM3	E	646	653	Right-handed alpha
Helix 112	AM4	E	662	673	Right-handed alpha
Helix 113	AM5	E	673	683	Right-handed alpha
Helix 114	AM6	E	692	703	Right-handed alpha
Helix 115	AM7	E	709	729	Right-handed alpha
Helix 116	AM8	E	738	741	Right-handed 310
Helix 117	AM9	E	742	747	Right-handed alpha
Helix 118	AN1	E	807	829	Right-handed alpha
Helix 119	AN2	E	853	855	Right-handed 310
Helix 120	AN3	E	856	870	Right-handed alpha
Helix 121	AN4	E	894	905	Right-handed alpha
Helix 122	AN5	E	916	921	Right-handed alpha
Helix 123	AN6	E	924	929	Right-handed alpha
Helix 124	AN7	E	938	947	Right-handed alpha
Helix 125	AN8	F	392	408	Right-handed alpha
Helix 126	AN9	F	413	425	Right-handed alpha
Helix 127	AO1	F	431	446	Right-handed alpha
Helix 128	AO2	F	452	468	Right-handed alpha
Helix 129	AO3	F	479	491	Right-handed alpha
Helix 130	AO4	F	494	512	Right-handed alpha
Helix 131	AO5	F	530	541	Right-handed alpha
Helix 132	AO6	F	555	560	Right-handed alpha
Helix 133	AO7	F	570	581	Right-handed alpha
Helix 134	AO8	F	592	595	Right-handed 310
Helix 135	AO9	F	602	611	Right-handed alpha
Helix 136	AP1	F	612	617	Right-handed alpha
Helix 137	AP2	F	646	653	Right-handed alpha
Helix 138	AP3	F	662	673	Right-handed alpha
Helix 139	AP4	F	673	683	Right-handed alpha
Helix 140	AP5	F	692	703	Right-handed alpha
Helix 141	AP6	F	709	729	Right-handed alpha
Helix 142	AP7	F	742	747	Right-handed alpha
Helix 143	AP8	F	807	829	Right-handed alpha
Helix 144	AP9	F	856	870	Right-handed alpha
Helix 145	AQ1	F	894	906	Right-handed alpha
Helix 146	AQ2	F	916	922	Right-handed alpha
Helix 147	AQ3	F	938	947	Right-handed alpha

There are 31 sheets in PDB entry 9Y5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	548	first strand
Strand 2	A	586	590	parallel
Strand 3	A	634	639	parallel
Strand 4	A	518	522	parallel
Strand 5	A	654	657	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	620	first strand
Strand 2	A	627	628	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	691	first strand
Strand 2	A	735	737	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	765	771	first strand
Strand 2	A	774	784	anti-parallel
Strand 3	A	839	843	anti-parallel
Strand 4	A	799	803	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	877	879	first strand
Strand 2	A	909	913	parallel
Strand 3	A	932	936	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	883	first strand
Strand 2	A	889	890	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	548	first strand
Strand 2	B	586	590	parallel
Strand 3	B	634	639	parallel
Strand 4	B	518	522	parallel
Strand 5	B	654	657	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	691	first strand
Strand 2	B	735	737	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	803	first strand
Strand 2	B	839	843	parallel
Strand 3	B	774	786	anti-parallel
Strand 4	B	765	771	anti-parallel
Strand 5	B	877	879	parallel
Strand 6	B	909	913	parallel
Strand 7	B	932	936	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	882	883	first strand
Strand 2	B	889	890	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	544	548	first strand
Strand 2	C	586	590	parallel
Strand 3	C	634	639	parallel
Strand 4	C	518	522	parallel
Strand 5	C	654	657	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	620	first strand
Strand 2	C	627	628	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	689	691	first strand
Strand 2	C	735	737	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	799	803	first strand
Strand 2	C	839	843	parallel
Strand 3	C	774	784	anti-parallel
Strand 4	C	765	771	anti-parallel
Strand 5	C	877	879	parallel
Strand 6	C	909	913	parallel
Strand 7	C	932	936	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	883	first strand
Strand 2	C	889	890	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	544	548	first strand
Strand 2	D	586	590	parallel
Strand 3	D	634	639	parallel
Strand 4	D	518	522	parallel
Strand 5	D	654	657	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	689	691	first strand
Strand 2	D	735	737	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	765	771	first strand
Strand 2	D	774	784	anti-parallel
Strand 3	D	839	843	anti-parallel
Strand 4	D	799	803	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	877	879	first strand
Strand 2	D	909	913	parallel
Strand 3	D	932	936	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	882	883	first strand
Strand 2	D	889	890	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	544	548	first strand
Strand 2	E	586	590	parallel
Strand 3	E	634	639	parallel
Strand 4	E	518	522	parallel
Strand 5	E	654	657	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	619	620	first strand
Strand 2	E	627	628	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	689	691	first strand
Strand 2	E	735	737	parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	799	803	first strand
Strand 2	E	839	843	parallel
Strand 3	E	774	784	anti-parallel
Strand 4	E	765	771	anti-parallel
Strand 5	E	877	879	parallel
Strand 6	E	909	913	parallel
Strand 7	E	932	936	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	882	883	first strand
Strand 2	E	889	890	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	544	548	first strand
Strand 2	F	586	590	parallel
Strand 3	F	634	639	parallel
Strand 4	F	518	522	parallel
Strand 5	F	654	657	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	619	620	first strand
Strand 2	F	627	628	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	689	691	first strand
Strand 2	F	735	737	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	764	771	first strand
Strand 2	F	774	784	anti-parallel
Strand 3	F	839	843	anti-parallel
Strand 4	F	799	803	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	877	879	first strand
Strand 2	F	909	913	parallel
Strand 3	F	932	936	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	882	883	first strand
Strand 2	F	889	890	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y5M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y5M