Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y5N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y5N entry

There are 6 chains in PDB entry 9Y5N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 416	PHE 947
B	ASP 415	PHE 947
C	ASP 415	PHE 947
D	ALA 416	PHE 947
E	ASP 415	PHE 947
F	ASP 415	PHE 947

There are158 helices in PDB entry 9Y5N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	417	424	Right-handed alpha
Helix 2	AA2	A	431	446	Right-handed alpha
Helix 3	AA3	A	452	468	Right-handed alpha
Helix 4	AA4	A	479	491	Right-handed alpha
Helix 5	AA5	A	494	511	Right-handed alpha
Helix 6	AA6	A	531	541	Right-handed alpha
Helix 7	AA7	A	555	560	Right-handed alpha
Helix 8	AA8	A	571	581	Right-handed alpha
Helix 9	AA9	A	591	595	Right-handed 310
Helix 10	AB1	A	603	608	Right-handed alpha
Helix 11	AB2	A	609	611	Right-handed 310
Helix 12	AB3	A	612	617	Right-handed alpha
Helix 13	AB4	A	641	645	Right-handed 310
Helix 14	AB5	A	646	652	Right-handed alpha
Helix 15	AB6	A	662	673	Right-handed alpha
Helix 16	AB7	A	673	683	Right-handed alpha
Helix 17	AB8	A	692	702	Right-handed alpha
Helix 18	AB9	A	709	729	Right-handed alpha
Helix 19	AC1	A	738	740	Right-handed 310
Helix 20	AC2	A	741	747	Right-handed alpha
Helix 21	AC3	A	807	829	Right-handed alpha
Helix 22	AC4	A	833	838	Right-handed alpha
Helix 23	AC5	A	853	855	Right-handed 310
Helix 24	AC6	A	856	870	Right-handed alpha
Helix 25	AC7	A	894	905	Right-handed alpha
Helix 26	AC8	A	916	922	Right-handed alpha
Helix 27	AC9	A	924	929	Right-handed alpha
Helix 28	AD1	A	938	946	Right-handed alpha
Helix 29	AD2	B	416	426	Right-handed alpha
Helix 30	AD3	B	431	448	Right-handed alpha
Helix 31	AD4	B	452	468	Right-handed alpha
Helix 32	AD5	B	479	491	Right-handed alpha
Helix 33	AD6	B	494	511	Right-handed alpha
Helix 34	AD7	B	528	541	Right-handed alpha
Helix 35	AD8	B	555	560	Right-handed alpha
Helix 36	AD9	B	570	581	Right-handed alpha
Helix 37	AE1	B	591	595	Right-handed 310
Helix 38	AE2	B	602	612	Right-handed alpha
Helix 39	AE3	B	615	619	Right-handed 310
Helix 40	AE4	B	646	651	Right-handed alpha
Helix 41	AE5	B	662	673	Right-handed alpha
Helix 42	AE6	B	673	683	Right-handed alpha
Helix 43	AE7	B	692	703	Right-handed alpha
Helix 44	AE8	B	709	729	Right-handed alpha
Helix 45	AE9	B	741	747	Right-handed alpha
Helix 46	AF1	B	807	829	Right-handed alpha
Helix 47	AF2	B	833	838	Right-handed alpha
Helix 48	AF3	B	853	855	Right-handed 310
Helix 49	AF4	B	856	870	Right-handed alpha
Helix 50	AF5	B	894	905	Right-handed alpha
Helix 51	AF6	B	916	921	Right-handed alpha
Helix 52	AF7	B	924	929	Right-handed alpha
Helix 53	AF8	B	938	946	Right-handed alpha
Helix 54	AF9	C	416	425	Right-handed alpha
Helix 55	AG1	C	426	428	Right-handed 310
Helix 56	AG2	C	431	446	Right-handed alpha
Helix 57	AG3	C	452	468	Right-handed alpha
Helix 58	AG4	C	479	491	Right-handed alpha
Helix 59	AG5	C	494	512	Right-handed alpha
Helix 60	AG6	C	528	541	Right-handed alpha
Helix 61	AG7	C	555	560	Right-handed alpha
Helix 62	AG8	C	570	581	Right-handed alpha
Helix 63	AG9	C	591	595	Right-handed 310
Helix 64	AH1	C	602	612	Right-handed alpha
Helix 65	AH2	C	612	617	Right-handed alpha
Helix 66	AH3	C	646	651	Right-handed alpha
Helix 67	AH4	C	662	673	Right-handed alpha
Helix 68	AH5	C	673	683	Right-handed alpha
Helix 69	AH6	C	692	703	Right-handed alpha
Helix 70	AH7	C	709	729	Right-handed alpha
Helix 71	AH8	C	742	747	Right-handed alpha
Helix 72	AH9	C	807	829	Right-handed alpha
Helix 73	AI1	C	833	838	Right-handed alpha
Helix 74	AI2	C	853	855	Right-handed 310
Helix 75	AI3	C	856	870	Right-handed alpha
Helix 76	AI4	C	894	906	Right-handed alpha
Helix 77	AI5	C	916	922	Right-handed alpha
Helix 78	AI6	C	924	930	Right-handed alpha
Helix 79	AI7	C	938	947	Right-handed alpha
Helix 80	AI8	D	417	424	Right-handed alpha
Helix 81	AI9	D	431	446	Right-handed alpha
Helix 82	AJ1	D	452	468	Right-handed alpha
Helix 83	AJ2	D	479	491	Right-handed alpha
Helix 84	AJ3	D	494	511	Right-handed alpha
Helix 85	AJ4	D	531	541	Right-handed alpha
Helix 86	AJ5	D	555	560	Right-handed alpha
Helix 87	AJ6	D	571	581	Right-handed alpha
Helix 88	AJ7	D	591	595	Right-handed 310
Helix 89	AJ8	D	603	608	Right-handed alpha
Helix 90	AJ9	D	609	611	Right-handed 310
Helix 91	AK1	D	612	617	Right-handed alpha
Helix 92	AK2	D	629	633	Right-handed 310
Helix 93	AK3	D	646	653	Right-handed alpha
Helix 94	AK4	D	662	673	Right-handed alpha
Helix 95	AK5	D	673	683	Right-handed alpha
Helix 96	AK6	D	692	703	Right-handed alpha
Helix 97	AK7	D	709	729	Right-handed alpha
Helix 98	AK8	D	741	747	Right-handed alpha
Helix 99	AK9	D	807	829	Right-handed alpha
Helix 100	AL1	D	833	838	Right-handed alpha
Helix 101	AL2	D	853	855	Right-handed 310
Helix 102	AL3	D	856	870	Right-handed alpha
Helix 103	AL4	D	894	905	Right-handed alpha
Helix 104	AL5	D	916	922	Right-handed alpha
Helix 105	AL6	D	924	929	Right-handed alpha
Helix 106	AL7	D	938	946	Right-handed alpha
Helix 107	AL8	E	416	424	Right-handed alpha
Helix 108	AL9	E	431	448	Right-handed alpha
Helix 109	AM1	E	452	468	Right-handed alpha
Helix 110	AM2	E	479	491	Right-handed alpha
Helix 111	AM3	E	494	511	Right-handed alpha
Helix 112	AM4	E	530	541	Right-handed alpha
Helix 113	AM5	E	555	560	Right-handed alpha
Helix 114	AM6	E	571	581	Right-handed alpha
Helix 115	AM7	E	591	595	Right-handed 310
Helix 116	AM8	E	602	611	Right-handed alpha
Helix 117	AM9	E	614	619	Right-handed 310
Helix 118	AN1	E	646	653	Right-handed alpha
Helix 119	AN2	E	662	673	Right-handed alpha
Helix 120	AN3	E	673	683	Right-handed alpha
Helix 121	AN4	E	692	703	Right-handed alpha
Helix 122	AN5	E	709	729	Right-handed alpha
Helix 123	AN6	E	741	747	Right-handed alpha
Helix 124	AN7	E	807	829	Right-handed alpha
Helix 125	AN8	E	833	838	Right-handed alpha
Helix 126	AN9	E	853	855	Right-handed 310
Helix 127	AO1	E	856	870	Right-handed alpha
Helix 128	AO2	E	894	905	Right-handed alpha
Helix 129	AO3	E	916	921	Right-handed alpha
Helix 130	AO4	E	924	929	Right-handed alpha
Helix 131	AO5	E	938	947	Right-handed alpha
Helix 132	AO6	F	416	425	Right-handed alpha
Helix 133	AO7	F	426	428	Right-handed 310
Helix 134	AO8	F	431	447	Right-handed alpha
Helix 135	AO9	F	452	468	Right-handed alpha
Helix 136	AP1	F	479	491	Right-handed alpha
Helix 137	AP2	F	494	512	Right-handed alpha
Helix 138	AP3	F	528	541	Right-handed alpha
Helix 139	AP4	F	555	560	Right-handed alpha
Helix 140	AP5	F	570	581	Right-handed alpha
Helix 141	AP6	F	591	595	Right-handed 310
Helix 142	AP7	F	602	612	Right-handed alpha
Helix 143	AP8	F	612	617	Right-handed alpha
Helix 144	AP9	F	641	645	Right-handed 310
Helix 145	AQ1	F	646	652	Right-handed alpha
Helix 146	AQ2	F	662	673	Right-handed alpha
Helix 147	AQ3	F	673	683	Right-handed alpha
Helix 148	AQ4	F	692	703	Right-handed alpha
Helix 149	AQ5	F	709	729	Right-handed alpha
Helix 150	AQ6	F	742	747	Right-handed alpha
Helix 151	AQ7	F	807	829	Right-handed alpha
Helix 152	AQ8	F	833	838	Right-handed alpha
Helix 153	AQ9	F	853	855	Right-handed 310
Helix 154	AR1	F	856	870	Right-handed alpha
Helix 155	AR2	F	894	906	Right-handed alpha
Helix 156	AR3	F	916	922	Right-handed alpha
Helix 157	AR4	F	924	929	Right-handed alpha
Helix 158	AR5	F	938	947	Right-handed alpha

There are 28 sheets in PDB entry 9Y5N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	548	first strand
Strand 2	A	586	590	parallel
Strand 3	A	634	639	parallel
Strand 4	A	518	522	parallel
Strand 5	A	654	657	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	691	first strand
Strand 2	A	735	737	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	765	770	first strand
Strand 2	A	775	784	anti-parallel
Strand 3	A	840	843	anti-parallel
Strand 4	A	800	803	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	877	879	first strand
Strand 2	A	909	913	parallel
Strand 3	A	934	936	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	882	883	first strand
Strand 2	A	889	890	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	548	first strand
Strand 2	B	586	590	parallel
Strand 3	B	634	639	parallel
Strand 4	B	518	522	parallel
Strand 5	B	654	657	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	691	first strand
Strand 2	B	735	737	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	799	803	first strand
Strand 2	B	839	843	parallel
Strand 3	B	775	784	anti-parallel
Strand 4	B	764	770	anti-parallel
Strand 5	B	877	879	parallel
Strand 6	B	909	913	parallel
Strand 7	B	934	936	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	882	883	first strand
Strand 2	B	889	890	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	544	548	first strand
Strand 2	C	586	590	parallel
Strand 3	C	634	639	parallel
Strand 4	C	517	522	parallel
Strand 5	C	654	657	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	689	691	first strand
Strand 2	C	735	737	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	771	first strand
Strand 2	C	774	784	anti-parallel
Strand 3	C	839	843	anti-parallel
Strand 4	C	799	803	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	877	879	first strand
Strand 2	C	909	913	parallel
Strand 3	C	932	936	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	883	first strand
Strand 2	C	889	890	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	544	548	first strand
Strand 2	D	586	590	parallel
Strand 3	D	634	639	parallel
Strand 4	D	518	522	parallel
Strand 5	D	656	657	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	689	691	first strand
Strand 2	D	735	737	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	765	771	first strand
Strand 2	D	774	786	anti-parallel
Strand 3	D	839	843	anti-parallel
Strand 4	D	800	803	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	877	878	first strand
Strand 2	D	909	913	parallel
Strand 3	D	934	936	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	882	883	first strand
Strand 2	D	889	890	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	544	548	first strand
Strand 2	E	586	590	parallel
Strand 3	E	634	639	parallel
Strand 4	E	518	522	parallel
Strand 5	E	654	657	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	689	691	first strand
Strand 2	E	735	737	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	799	803	first strand
Strand 2	E	839	843	parallel
Strand 3	E	775	784	anti-parallel
Strand 4	E	765	770	anti-parallel
Strand 5	E	877	879	parallel
Strand 6	E	909	913	parallel
Strand 7	E	934	936	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	882	883	first strand
Strand 2	E	889	890	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	544	548	first strand
Strand 2	F	586	590	parallel
Strand 3	F	634	639	parallel
Strand 4	F	518	522	parallel
Strand 5	F	654	657	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	689	691	first strand
Strand 2	F	735	737	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	765	771	first strand
Strand 2	F	774	786	anti-parallel
Strand 3	F	839	843	anti-parallel
Strand 4	F	800	803	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	877	879	first strand
Strand 2	F	909	913	parallel
Strand 3	F	932	936	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	882	883	first strand
Strand 2	F	889	890	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y5N

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y5N