Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y63 entry

There are 3 chains in PDB entry 9Y63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 33	MET 285
B	GLU 33	MET 285
C	GLU 33	ALA 284

There are 8 helices in PDB entry 9Y63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	161	165	Right-handed 310
Helix 2	AA2	A	174	180	Right-handed alpha
Helix 3	AA3	B	152	154	Right-handed 310
Helix 4	AA4	B	161	165	Right-handed 310
Helix 5	AA5	B	174	179	Right-handed alpha
Helix 6	AA6	C	152	154	Right-handed 310
Helix 7	AA7	C	161	165	Right-handed 310
Helix 8	AA8	C	174	180	Right-handed alpha

There are 10 sheets in PDB entry 9Y63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	34	42	anti-parallel
Strand 3	A	110	119	parallel
Strand 4	B	123	127	anti-parallel
Strand 5	B	131	136	anti-parallel
Strand 6	B	146	150	anti-parallel
Strand 7	B	224	229	anti-parallel
Strand 8	B	270	275	anti-parallel
Strand 9	B	253	262	anti-parallel
Strand 10	B	240	248	anti-parallel
Strand 11	B	279	285	anti-parallel
Strand 12	B	201	211	anti-parallel
Strand 13	B	166	171	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	110	119	anti-parallel
Strand 3	B	123	127	anti-parallel
Strand 4	B	131	136	anti-parallel
Strand 5	B	146	150	anti-parallel
Strand 6	B	224	229	anti-parallel
Strand 7	B	270	275	anti-parallel
Strand 8	B	253	262	anti-parallel
Strand 9	B	186	187	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	53	58	anti-parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	98	102	anti-parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	171	first strand
Strand 2	A	201	211	anti-parallel
Strand 3	A	279	285	anti-parallel
Strand 4	A	241	248	anti-parallel
Strand 5	A	253	262	anti-parallel
Strand 6	A	270	275	anti-parallel
Strand 7	A	224	229	anti-parallel
Strand 8	A	146	150	anti-parallel
Strand 9	A	131	136	anti-parallel
Strand 10	A	123	127	anti-parallel
Strand 11	C	110	119	anti-parallel
Strand 12	C	34	42	parallel
Strand 13	C	73	78	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	253	262	parallel
Strand 3	A	270	275	anti-parallel
Strand 4	A	224	229	anti-parallel
Strand 5	A	146	150	anti-parallel
Strand 6	A	131	136	anti-parallel
Strand 7	A	123	127	anti-parallel
Strand 8	C	110	119	anti-parallel
Strand 9	C	95	96	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	219	220	anti-parallel

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There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	78	first strand
Strand 2	B	34	42	anti-parallel
Strand 3	B	110	119	parallel
Strand 4	C	123	127	anti-parallel
Strand 5	C	131	136	anti-parallel
Strand 6	C	146	150	anti-parallel
Strand 7	C	224	229	anti-parallel
Strand 8	C	270	275	anti-parallel
Strand 9	C	253	262	anti-parallel
Strand 10	C	241	248	anti-parallel
Strand 11	C	279	284	anti-parallel
Strand 12	C	204	211	anti-parallel
Strand 13	C	166	171	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	110	119	anti-parallel
Strand 3	C	123	127	anti-parallel
Strand 4	C	131	136	anti-parallel
Strand 5	C	146	150	anti-parallel
Strand 6	C	224	229	anti-parallel
Strand 7	C	270	275	anti-parallel
Strand 8	C	253	262	anti-parallel
Strand 9	C	186	187	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	53	58	anti-parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	98	102	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	67	first strand
Strand 2	C	53	58	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	98	102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y63

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y63