Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y66


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y66 entry

There are 4 chains in PDB entry 9Y66 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 537
C
 MET 1ASP 537
E
 C -28 A 34
F
 T -34 G 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9Y66. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 9Right-handed alpha
Helix 2
AA2
A
22 33Right-handed alpha
Helix 3
AA3
A
35 52Right-handed alpha
Helix 4
AA4
A
66 69Right-handed 310
Helix 5
AA5
A
70 83Right-handed alpha
Helix 6
AA6
A
92 96Right-handed 310
Helix 7
AA7
A
99 115Right-handed alpha
Helix 8
AA8
A
129 141Right-handed alpha
Helix 9
AA9
A
141 164Right-handed alpha
Helix 10
AB1
A
188 205Right-handed alpha
Helix 11
AB2
A
212 223Right-handed alpha
Helix 12
AB3
A
235 244Right-handed alpha
Helix 13
AB4
A
245 250Right-handed 310
Helix 14
AB5
A
285 299Right-handed alpha
Helix 15
AB6
A
363 380Right-handed alpha
Helix 16
AB7
A
381 397Right-handed alpha
Helix 17
AB8
A
402 433Right-handed alpha
Helix 18
AB9
A
437 464Right-handed alpha
Helix 19
AC1
A
468 473Right-handed alpha
Helix 20
AC2
A
473 491Right-handed alpha
Helix 21
AC3
A
493 504Right-handed alpha
Helix 22
AC4
A
531 537Right-handed alpha
Helix 23
AC5
C
2 9Right-handed alpha
Helix 24
AC6
C
22 31Right-handed alpha
Helix 25
AC7
C
35 52Right-handed alpha
Helix 26
AC8
C
66 69Right-handed 310
Helix 27
AC9
C
70 83Right-handed alpha
Helix 28
AD1
C
92 96Right-handed 310
Helix 29
AD2
C
100 115Right-handed alpha
Helix 30
AD3
C
129 141Right-handed alpha
Helix 31
AD4
C
142 164Right-handed alpha
Helix 32
AD5
C
188 205Right-handed alpha
Helix 33
AD6
C
212 223Right-handed alpha
Helix 34
AD7
C
235 245Right-handed alpha
Helix 35
AD8
C
246 250Right-handed 310
Helix 36
AD9
C
285 299Right-handed alpha
Helix 37
AE1
C
364 369Right-handed alpha
Helix 38
AE2
C
369 377Right-handed alpha
Helix 39
AE3
C
383 397Right-handed alpha
Helix 40
AE4
C
405 433Right-handed alpha
Helix 41
AE5
C
437 464Right-handed alpha
Helix 42
AE6
C
465 469Right-handed 310
Helix 43
AE7
C
473 491Right-handed alpha
Helix 44
AE8
C
493 504Right-handed alpha
Helix 45
AE9
C
531 537Right-handed alpha
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There are 12 sheets in PDB entry 9Y66. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
15 19parallel
Strand 3
A
87 89parallel
Strand 4
A
117 119parallel
Strand 5
A
124 125anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
184 187anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
274 276anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
265 267anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
505 514parallel
Strand 3
A
523 530anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 337first strand
Strand 2
A
343 352anti-parallel
Strand 3
A
360 362anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 56first strand
Strand 2
C
15 17parallel
Strand 3
C
88 89parallel
Strand 4
C
118 119parallel
Strand 5
C
124 125anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 179first strand
Strand 2
C
184 187anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 254first strand
Strand 2
C
274 276anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 259first strand
Strand 2
C
265 267anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
319 320first strand
Strand 2
C
505 514parallel
Strand 3
C
523 530anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
328 337first strand
Strand 2
C
343 352anti-parallel
Strand 3
C
360 362anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il