Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y68

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y68 entry

There is 1 chain in PDB entry 9Y68 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 624	GLU 2527

There are 53 helices in PDB entry 9Y68. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	624	639	Right-handed alpha
Helix 2	AA2	A	642	659	Right-handed alpha
Helix 3	AA3	A	659	670	Right-handed alpha
Helix 4	AA4	A	670	680	Right-handed alpha
Helix 5	AA5	A	688	703	Right-handed alpha
Helix 6	AA6	A	706	717	Right-handed alpha
Helix 7	AA7	A	721	731	Right-handed alpha
Helix 8	AA8	A	743	751	Right-handed alpha
Helix 9	AA9	A	754	764	Right-handed alpha
Helix 10	AB1	A	767	781	Right-handed alpha
Helix 11	AB2	A	785	795	Right-handed alpha
Helix 12	AB3	A	833	854	Right-handed alpha
Helix 13	AB4	A	997	1001	Right-handed 310
Helix 14	AB5	A	1027	1034	Right-handed alpha
Helix 15	AB6	A	1053	1057	Right-handed 310
Helix 16	AB7	A	1189	1194	Right-handed alpha
Helix 17	AB8	A	1213	1217	Right-handed 310
Helix 18	AB9	A	1240	1245	Right-handed 310
Helix 19	AC1	A	1261	1267	Right-handed 310
Helix 20	AC2	A	1316	1328	Right-handed alpha
Helix 21	AC3	A	1348	1355	Right-handed alpha
Helix 22	AC4	A	1398	1402	Right-handed 310
Helix 23	AC5	A	1404	1409	Right-handed 310
Helix 24	AC6	A	1420	1424	Right-handed 310
Helix 25	AC7	A	1431	1442	Right-handed alpha
Helix 26	AC8	A	1466	1474	Right-handed alpha
Helix 27	AC9	A	1494	1509	Right-handed alpha
Helix 28	AD1	A	1517	1520	Right-handed 310
Helix 29	AD2	A	1525	1538	Right-handed alpha
Helix 30	AD3	A	1549	1560	Right-handed alpha
Helix 31	AD4	A	1568	1579	Right-handed alpha
Helix 32	AD5	A	1599	1608	Right-handed alpha
Helix 33	AD6	A	1646	1655	Right-handed alpha
Helix 34	AD7	A	1703	1716	Right-handed alpha
Helix 35	AD8	A	1770	1792	Right-handed alpha
Helix 36	AD9	A	1828	1835	Right-handed alpha
Helix 37	AE1	A	1853	1855	Right-handed 310
Helix 38	AE2	A	1881	1885	Right-handed 310
Helix 39	AE3	A	1913	1925	Right-handed alpha
Helix 40	AE4	A	1954	1962	Right-handed alpha
Helix 41	AE5	A	1969	1988	Right-handed alpha
Helix 42	AE6	A	1996	1998	Right-handed 310
Helix 43	AE7	A	2040	2046	Right-handed alpha
Helix 44	AE8	A	2053	2069	Right-handed alpha
Helix 45	AE9	A	2072	2077	Right-handed alpha
Helix 46	AF1	A	2079	2089	Right-handed alpha
Helix 47	AF2	A	2094	2099	Right-handed alpha
Helix 48	AF3	A	2104	2115	Right-handed alpha
Helix 49	AF4	A	2124	2134	Right-handed alpha
Helix 50	AF5	A	2135	2139	Right-handed alpha
Helix 51	AF6	A	2277	2281	Right-handed 310
Helix 52	AF7	A	2389	2397	Right-handed alpha
Helix 53	AF8	A	2499	2524	Right-handed alpha

There are 20 sheets in PDB entry 9Y68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	804	first strand
Strand 2	A	986	988	parallel
Strand 3	A	1015	1017	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1063	1064	first strand
Strand 2	A	1087	1089	parallel
Strand 3	A	1111	1113	parallel
Strand 4	A	1133	1135	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1157	1159	first strand
Strand 2	A	1177	1179	parallel
Strand 3	A	1200	1202	parallel
Strand 4	A	1224	1226	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1249	1251	first strand
Strand 2	A	1272	1274	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1329	1331	first strand
Strand 2	A	1522	1524	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1373	1377	first strand
Strand 2	A	1389	1394	anti-parallel
Strand 3	A	1336	1340	parallel
Strand 4	A	1414	1418	parallel
Strand 5	A	1447	1451	parallel
Strand 6	A	1482	1487	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1547	1548	first strand
Strand 2	A	1596	1597	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1730	1734	first strand
Strand 2	A	1737	1741	anti-parallel
Strand 3	A	1748	1753	anti-parallel
Strand 4	A	1761	1768	anti-parallel
Strand 5	A	1690	1697	anti-parallel
Strand 6	A	1809	1812	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1840	1841	first strand
Strand 2	A	1850	1851	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1875	1876	first strand
Strand 2	A	1897	1898	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1893	1895	first strand
Strand 2	A	1904	1906	anti-parallel
Strand 3	A	1945	1947	anti-parallel
Strand 4	A	1935	1938	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2000	2002	first strand
Strand 2	A	2013	2015	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2140	2145	first strand
Strand 2	A	2492	2497	anti-parallel
Strand 3	A	2466	2475	anti-parallel
Strand 4	A	2454	2463	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2155	2156	first strand
Strand 2	A	2167	2169	anti-parallel
Strand 3	A	2179	2182	anti-parallel
Strand 4	A	2189	2192	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2205	first strand
Strand 2	A	2214	2219	anti-parallel
Strand 3	A	2223	2227	anti-parallel
Strand 4	A	2235	2240	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2245	2249	first strand
Strand 2	A	2264	2267	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2271	2273	first strand
Strand 2	A	2290	2292	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2300	2302	first strand
Strand 2	A	2318	2319	anti-parallel
Strand 3	A	2322	2325	anti-parallel
Strand 4	A	2334	2337	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2359	first strand
Strand 2	A	2363	2367	anti-parallel
Strand 3	A	2372	2376	anti-parallel
Strand 4	A	2385	2388	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2419	first strand
Strand 2	A	2425	2429	anti-parallel
Strand 3	A	2434	2437	anti-parallel
Strand 4	A	2444	2448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y68

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y68