Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y6N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y6N entry

There are 3 chains in PDB entry 9Y6N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 38LEU 295
B
 PRO 38LEU 295
C
 PRO 38LEU 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 9Y6N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
157 161Right-handed 310
Helix 2
AA2
A
183 187Right-handed 310
Helix 3
AA3
B
157 161Right-handed 310
Helix 4
AA4
B
183 188Right-handed 310
Helix 5
AA5
C
159 161Right-handed 310
Helix 6
AA6
C
183 187Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 9Y6N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 87first strand
Strand 2
A
39 49anti-parallel
Strand 3
A
117 124parallel
Strand 4
B
131 135anti-parallel
Strand 5
B
138 142anti-parallel
Strand 6
B
153 156anti-parallel
Strand 7
B
231 237anti-parallel
Strand 8
B
276 283anti-parallel
Strand 9
B
262 273anti-parallel
Strand 10
B
249 255anti-parallel
Strand 11
B
287 291anti-parallel
Strand 12
B
211 218anti-parallel
Strand 13
B
173 179anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 87first strand
Strand 2
A
39 49anti-parallel
Strand 3
A
117 124parallel
Strand 4
B
131 135anti-parallel
Strand 5
B
138 142anti-parallel
Strand 6
B
153 156anti-parallel
Strand 7
B
231 237anti-parallel
Strand 8
B
276 283anti-parallel
Strand 9
B
262 273anti-parallel
Strand 10
B
192 194parallel
Strand 11
B
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
60 64anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
105 109anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 179first strand
Strand 2
A
211 218anti-parallel
Strand 3
A
287 291anti-parallel
Strand 4
A
249 255anti-parallel
Strand 5
A
262 273anti-parallel
Strand 6
A
192 194parallel
Strand 7
A
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 179first strand
Strand 2
A
211 218anti-parallel
Strand 3
A
287 291anti-parallel
Strand 4
A
249 255anti-parallel
Strand 5
A
262 273anti-parallel
Strand 6
A
276 283anti-parallel
Strand 7
A
231 237anti-parallel
Strand 8
A
153 156anti-parallel
Strand 9
A
138 142anti-parallel
Strand 10
A
131 135anti-parallel
Strand 11
C
115 124anti-parallel
Strand 12
C
39 49parallel
Strand 13
C
80 87anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 87first strand
Strand 2
B
39 49anti-parallel
Strand 3
B
117 124parallel
Strand 4
C
131 134anti-parallel
Strand 5
C
138 142anti-parallel
Strand 6
C
153 157anti-parallel
Strand 7
C
231 237anti-parallel
Strand 8
C
276 283anti-parallel
Strand 9
C
262 273anti-parallel
Strand 10
C
250 255anti-parallel
Strand 11
C
287 291anti-parallel
Strand 12
C
211 218anti-parallel
Strand 13
C
173 179anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 87first strand
Strand 2
B
39 49anti-parallel
Strand 3
B
117 124parallel
Strand 4
C
131 134anti-parallel
Strand 5
C
138 142anti-parallel
Strand 6
C
153 157anti-parallel
Strand 7
C
231 237anti-parallel
Strand 8
C
276 283anti-parallel
Strand 9
C
262 273anti-parallel
Strand 10
C
192 194parallel
Strand 11
C
205 206anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
60 64anti-parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
105 110anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 74first strand
Strand 2
C
60 65anti-parallel
Strand 3
C
92 98anti-parallel
Strand 4
C
105 110anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il