Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y6V entry

There are 6 chains in PDB entry 9Y6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 535
B	PRO 3	GLU 58
C	MET 1	ILE 535
D	PRO 3	GLU 58
E	A -29	T 28
F	A -28	T 29

There are 44 helices in PDB entry 9Y6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	9	Right-handed alpha
Helix 2	AA2	A	22	33	Right-handed alpha
Helix 3	AA3	A	35	52	Right-handed alpha
Helix 4	AA4	A	70	82	Right-handed alpha
Helix 5	AA5	A	92	96	Right-handed 310
Helix 6	AA6	A	100	115	Right-handed alpha
Helix 7	AA7	A	129	141	Right-handed alpha
Helix 8	AA8	A	141	164	Right-handed alpha
Helix 9	AA9	A	188	205	Right-handed alpha
Helix 10	AB1	A	212	223	Right-handed alpha
Helix 11	AB2	A	235	244	Right-handed alpha
Helix 12	AB3	A	245	250	Right-handed 310
Helix 13	AB4	A	285	298	Right-handed alpha
Helix 14	AB5	A	363	376	Right-handed alpha
Helix 15	AB6	A	381	398	Right-handed alpha
Helix 16	AB7	A	398	433	Right-handed alpha
Helix 17	AB8	A	437	468	Right-handed alpha
Helix 18	AB9	A	473	479	Right-handed alpha
Helix 19	AC1	A	483	491	Right-handed alpha
Helix 20	AC2	A	493	504	Right-handed alpha
Helix 21	AC3	B	4	13	Right-handed alpha
Helix 22	AC4	B	36	58	Right-handed alpha
Helix 23	AC5	C	2	10	Right-handed alpha
Helix 24	AC6	C	22	31	Right-handed alpha
Helix 25	AC7	C	35	52	Right-handed alpha
Helix 26	AC8	C	70	82	Right-handed alpha
Helix 27	AC9	C	92	97	Right-handed alpha
Helix 28	AD1	C	100	115	Right-handed alpha
Helix 29	AD2	C	129	141	Right-handed alpha
Helix 30	AD3	C	141	164	Right-handed alpha
Helix 31	AD4	C	188	205	Right-handed alpha
Helix 32	AD5	C	212	223	Right-handed alpha
Helix 33	AD6	C	235	244	Right-handed alpha
Helix 34	AD7	C	245	250	Right-handed 310
Helix 35	AD8	C	285	299	Right-handed alpha
Helix 36	AD9	C	363	376	Right-handed alpha
Helix 37	AE1	C	382	397	Right-handed alpha
Helix 38	AE2	C	404	433	Right-handed alpha
Helix 39	AE3	C	437	463	Right-handed alpha
Helix 40	AE4	C	473	479	Right-handed alpha
Helix 41	AE5	C	483	491	Right-handed alpha
Helix 42	AE6	C	493	504	Right-handed alpha
Helix 43	AE7	D	4	12	Right-handed alpha
Helix 44	AE8	D	36	58	Right-handed alpha

There are 14 sheets in PDB entry 9Y6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	15	19	parallel
Strand 3	A	87	89	parallel
Strand 4	A	117	119	parallel
Strand 5	A	124	125	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	179	first strand
Strand 2	A	184	187	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	274	276	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	259	first strand
Strand 2	A	265	267	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	A	505	514	parallel
Strand 3	A	523	530	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	337	first strand
Strand 2	A	343	352	anti-parallel
Strand 3	A	361	362	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	19	first strand
Strand 2	B	24	28	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	59	first strand
Strand 2	C	15	19	parallel
Strand 3	C	87	89	parallel
Strand 4	C	117	119	parallel
Strand 5	C	124	125	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	179	first strand
Strand 2	C	184	187	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	274	276	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	259	first strand
Strand 2	C	265	267	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	505	514	parallel
Strand 3	C	523	530	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	337	first strand
Strand 2	C	343	352	anti-parallel
Strand 3	C	360	362	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	19	first strand
Strand 2	D	24	28	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y6V