Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y70

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y70 entry

There are 4 chains in PDB entry 9Y70 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 39	HIS 519
B	GLU 39	HIS 519
C	GLU 39	HIS 519
D	GLU 39	HIS 519

There are 80 helices in PDB entry 9Y70. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	49	Right-handed alpha
Helix 2	AA2	A	51	59	Right-handed alpha
Helix 3	AA3	A	63	106	Right-handed alpha
Helix 4	AA4	A	123	140	Right-handed alpha
Helix 5	AA5	A	140	145	Right-handed alpha
Helix 6	AA6	A	194	201	Right-handed alpha
Helix 7	AA7	A	201	207	Right-handed alpha
Helix 8	AA8	A	208	212	Right-handed 310
Helix 9	AA9	A	232	236	Right-handed 310
Helix 10	AB1	A	292	330	Right-handed alpha
Helix 11	AB2	A	338	343	Right-handed alpha
Helix 12	AB3	A	344	370	Right-handed alpha
Helix 13	AB4	A	376	398	Right-handed alpha
Helix 14	AB5	A	400	413	Right-handed alpha
Helix 15	AB6	A	413	440	Right-handed alpha
Helix 16	AB7	A	443	447	Right-handed 310
Helix 17	AB8	A	448	461	Right-handed alpha
Helix 18	AB9	A	464	471	Right-handed alpha
Helix 19	AC1	A	476	497	Right-handed alpha
Helix 20	AC2	A	497	519	Right-handed alpha
Helix 21	AC3	B	40	49	Right-handed alpha
Helix 22	AC4	B	51	59	Right-handed alpha
Helix 23	AC5	B	63	106	Right-handed alpha
Helix 24	AC6	B	123	140	Right-handed alpha
Helix 25	AC7	B	140	145	Right-handed alpha
Helix 26	AC8	B	194	201	Right-handed alpha
Helix 27	AC9	B	201	207	Right-handed alpha
Helix 28	AD1	B	208	212	Right-handed 310
Helix 29	AD2	B	232	236	Right-handed 310
Helix 30	AD3	B	292	330	Right-handed alpha
Helix 31	AD4	B	338	343	Right-handed alpha
Helix 32	AD5	B	344	370	Right-handed alpha
Helix 33	AD6	B	376	398	Right-handed alpha
Helix 34	AD7	B	400	413	Right-handed alpha
Helix 35	AD8	B	413	440	Right-handed alpha
Helix 36	AD9	B	443	447	Right-handed 310
Helix 37	AE1	B	448	461	Right-handed alpha
Helix 38	AE2	B	464	471	Right-handed alpha
Helix 39	AE3	B	476	497	Right-handed alpha
Helix 40	AE4	B	497	519	Right-handed alpha
Helix 41	AE5	C	40	49	Right-handed alpha
Helix 42	AE6	C	51	59	Right-handed alpha
Helix 43	AE7	C	63	106	Right-handed alpha
Helix 44	AE8	C	123	140	Right-handed alpha
Helix 45	AE9	C	140	145	Right-handed alpha
Helix 46	AF1	C	194	201	Right-handed alpha
Helix 47	AF2	C	201	207	Right-handed alpha
Helix 48	AF3	C	208	212	Right-handed 310
Helix 49	AF4	C	232	236	Right-handed 310
Helix 50	AF5	C	292	330	Right-handed alpha
Helix 51	AF6	C	338	343	Right-handed alpha
Helix 52	AF7	C	344	370	Right-handed alpha
Helix 53	AF8	C	376	398	Right-handed alpha
Helix 54	AF9	C	400	413	Right-handed alpha
Helix 55	AG1	C	413	440	Right-handed alpha
Helix 56	AG2	C	443	447	Right-handed 310
Helix 57	AG3	C	448	461	Right-handed alpha
Helix 58	AG4	C	464	471	Right-handed alpha
Helix 59	AG5	C	476	497	Right-handed alpha
Helix 60	AG6	C	497	519	Right-handed alpha
Helix 61	AG7	D	40	49	Right-handed alpha
Helix 62	AG8	D	51	59	Right-handed alpha
Helix 63	AG9	D	63	106	Right-handed alpha
Helix 64	AH1	D	123	140	Right-handed alpha
Helix 65	AH2	D	140	145	Right-handed alpha
Helix 66	AH3	D	194	201	Right-handed alpha
Helix 67	AH4	D	201	207	Right-handed alpha
Helix 68	AH5	D	208	212	Right-handed 310
Helix 69	AH6	D	232	236	Right-handed 310
Helix 70	AH7	D	292	330	Right-handed alpha
Helix 71	AH8	D	338	343	Right-handed alpha
Helix 72	AH9	D	344	370	Right-handed alpha
Helix 73	AI1	D	376	398	Right-handed alpha
Helix 74	AI2	D	400	413	Right-handed alpha
Helix 75	AI3	D	413	440	Right-handed alpha
Helix 76	AI4	D	443	447	Right-handed 310
Helix 77	AI5	D	448	461	Right-handed alpha
Helix 78	AI6	D	464	471	Right-handed alpha
Helix 79	AI7	D	476	497	Right-handed alpha
Helix 80	AI8	D	497	519	Right-handed alpha

There are 8 sheets in PDB entry 9Y70. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	261	271	anti-parallel
Strand 3	A	243	253	anti-parallel
Strand 4	A	218	230	anti-parallel
Strand 5	A	149	151	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	261	271	anti-parallel
Strand 3	A	243	253	anti-parallel
Strand 4	A	218	230	anti-parallel
Strand 5	A	161	168	anti-parallel
Strand 6	A	186	193	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	261	271	anti-parallel
Strand 3	B	243	253	anti-parallel
Strand 4	B	218	230	anti-parallel
Strand 5	B	149	151	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	261	271	anti-parallel
Strand 3	B	243	253	anti-parallel
Strand 4	B	218	230	anti-parallel
Strand 5	B	161	168	anti-parallel
Strand 6	B	186	193	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	261	271	anti-parallel
Strand 3	C	243	253	anti-parallel
Strand 4	C	218	230	anti-parallel
Strand 5	C	149	151	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	261	271	anti-parallel
Strand 3	C	243	253	anti-parallel
Strand 4	C	218	230	anti-parallel
Strand 5	C	161	168	anti-parallel
Strand 6	C	186	193	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	261	271	anti-parallel
Strand 3	D	243	253	anti-parallel
Strand 4	D	218	230	anti-parallel
Strand 5	D	149	151	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	261	271	anti-parallel
Strand 3	D	243	253	anti-parallel
Strand 4	D	218	230	anti-parallel
Strand 5	D	161	168	anti-parallel
Strand 6	D	186	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y70

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y70