Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y75

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y75 entry

There are 4 chains in PDB entry 9Y75 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 65	THR 512
C	LYS 65	THR 512
B	LYS 65	THR 512
D	LYS 65	THR 512

There are 52 helices in PDB entry 9Y75. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	106	Right-handed alpha
Helix 2	AA2	A	123	140	Right-handed alpha
Helix 3	AA3	A	195	201	Right-handed alpha
Helix 4	AA4	A	208	212	Right-handed 310
Helix 5	AA5	A	231	238	Right-handed 310
Helix 6	AA6	A	292	322	Right-handed alpha
Helix 7	AA7	A	346	371	Right-handed alpha
Helix 8	AA8	A	376	392	Right-handed alpha
Helix 9	AA9	A	393	397	Right-handed 310
Helix 10	AB1	A	402	439	Right-handed alpha
Helix 11	AB2	A	448	461	Right-handed alpha
Helix 12	AB3	A	464	471	Right-handed alpha
Helix 13	AB4	A	476	512	Right-handed alpha
Helix 14	AB5	C	66	106	Right-handed alpha
Helix 15	AB6	C	123	140	Right-handed alpha
Helix 16	AB7	C	195	201	Right-handed alpha
Helix 17	AB8	C	208	212	Right-handed 310
Helix 18	AB9	C	231	238	Right-handed 310
Helix 19	AC1	C	292	322	Right-handed alpha
Helix 20	AC2	C	346	371	Right-handed alpha
Helix 21	AC3	C	376	392	Right-handed alpha
Helix 22	AC4	C	393	397	Right-handed 310
Helix 23	AC5	C	402	439	Right-handed alpha
Helix 24	AC6	C	448	461	Right-handed alpha
Helix 25	AC7	C	464	471	Right-handed alpha
Helix 26	AC8	C	476	512	Right-handed alpha
Helix 27	AC9	B	66	106	Right-handed alpha
Helix 28	AD1	B	123	140	Right-handed alpha
Helix 29	AD2	B	195	201	Right-handed alpha
Helix 30	AD3	B	208	212	Right-handed 310
Helix 31	AD4	B	231	238	Right-handed 310
Helix 32	AD5	B	292	322	Right-handed alpha
Helix 33	AD6	B	346	371	Right-handed alpha
Helix 34	AD7	B	376	392	Right-handed alpha
Helix 35	AD8	B	393	397	Right-handed 310
Helix 36	AD9	B	402	439	Right-handed alpha
Helix 37	AE1	B	448	461	Right-handed alpha
Helix 38	AE2	B	464	471	Right-handed alpha
Helix 39	AE3	B	476	512	Right-handed alpha
Helix 40	AE4	D	66	106	Right-handed alpha
Helix 41	AE5	D	123	140	Right-handed alpha
Helix 42	AE6	D	195	201	Right-handed alpha
Helix 43	AE7	D	208	212	Right-handed 310
Helix 44	AE8	D	231	238	Right-handed 310
Helix 45	AE9	D	292	322	Right-handed alpha
Helix 46	AF1	D	346	371	Right-handed alpha
Helix 47	AF2	D	376	392	Right-handed alpha
Helix 48	AF3	D	393	397	Right-handed 310
Helix 49	AF4	D	402	439	Right-handed alpha
Helix 50	AF5	D	448	461	Right-handed alpha
Helix 51	AF6	D	464	471	Right-handed alpha
Helix 52	AF7	D	476	512	Right-handed alpha

There are 8 sheets in PDB entry 9Y75. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	121	first strand
Strand 2	A	261	265	anti-parallel
Strand 3	A	243	253	anti-parallel
Strand 4	A	218	228	anti-parallel
Strand 5	A	160	168	anti-parallel
Strand 6	A	186	194	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	218	228	anti-parallel
Strand 3	A	243	253	anti-parallel
Strand 4	A	268	272	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	261	265	anti-parallel
Strand 3	C	243	253	anti-parallel
Strand 4	C	218	228	anti-parallel
Strand 5	C	160	168	anti-parallel
Strand 6	C	186	194	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	151	first strand
Strand 2	C	218	228	anti-parallel
Strand 3	C	243	253	anti-parallel
Strand 4	C	268	272	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	261	265	anti-parallel
Strand 3	B	243	253	anti-parallel
Strand 4	B	218	228	anti-parallel
Strand 5	B	160	168	anti-parallel
Strand 6	B	186	194	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	218	228	anti-parallel
Strand 3	B	243	253	anti-parallel
Strand 4	B	268	272	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	121	first strand
Strand 2	D	261	265	anti-parallel
Strand 3	D	243	253	anti-parallel
Strand 4	D	218	228	anti-parallel
Strand 5	D	160	168	anti-parallel
Strand 6	D	186	194	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	218	228	anti-parallel
Strand 3	D	243	253	anti-parallel
Strand 4	D	268	272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y75

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y75