Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y7C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y7C entry

There are 5 chains in PDB entry 9Y7C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1SER 113
L
 GLN 1LEU 106
B
 GLN 1SER 113
C
 VAL 11LEU 107
A
 ASN 503ASN 716
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9Y7C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
60 64Right-handed 310
Helix 2
AA2
L
79 83Right-handed 310
Helix 3
AA3
B
83 87Right-handed 310
Helix 4
AA4
B
98 100Right-handed 310
Helix 5
AA5
C
79 83Right-handed 310
Helix 6
AA6
A
517 522Right-handed alpha
Helix 7
AA7
A
522 528Right-handed alpha
Helix 8
AA8
A
571 596Right-handed alpha
Helix 9
AA9
A
607 631Right-handed alpha
Helix 10
AB1
A
640 644Right-handed 310
Helix 11
AB2
A
646 654Right-handed alpha
Helix 12
AB3
A
654 662Right-handed alpha
Helix 13
AB4
A
664 684Right-handed alpha
Helix 14
AB5
A
694 713Right-handed alpha
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There are 13 sheets in PDB entry 9Y7C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
22 25anti-parallel
Strand 3
H
77 78anti-parallel
Strand 4
H
71 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
109 111parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 51first strand
Strand 2
H
34 39anti-parallel
Strand 3
H
89 92anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
94 95first strand
Strand 2
H
100 102anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 13first strand
Strand 2
L
103 106parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 24first strand
Strand 2
L
70 76anti-parallel
Strand 3
L
62 67anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
45 48first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
95 97anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
77 81anti-parallel
Strand 4
B
68 72anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
107 111parallel
Strand 3
B
88 92anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
102 106parallel
Strand 3
C
84 92anti-parallel
Strand 4
C
34 38anti-parallel
Strand 5
C
45 48anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
102 106parallel
Strand 3
C
84 92anti-parallel
Strand 4
C
95 98anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 22first strand
Strand 2
C
72 76anti-parallel
Strand 3
C
62 65anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 505first strand
Strand 2
A
541 542anti-parallel
Strand 3
A
552 554anti-parallel
Strand 4
A
568 570anti-parallel
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