Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y7H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y7H entry

There are 3 chains in PDB entry 9Y7H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	GLU 882
B	ARG 8	TRP 339
G	ALA 10	PHE 61

There are 34 helices in PDB entry 9Y7H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	25	Right-handed alpha
Helix 2	AA2	A	83	90	Right-handed alpha
Helix 3	AA3	A	99	101	Right-handed 310
Helix 4	AA4	A	127	140	Right-handed alpha
Helix 5	AA5	A	141	146	Right-handed alpha
Helix 6	AA6	A	148	163	Right-handed alpha
Helix 7	AA7	A	172	179	Right-handed alpha
Helix 8	AA8	A	182	194	Right-handed alpha
Helix 9	AA9	A	204	208	Right-handed 310
Helix 10	AB1	A	209	219	Right-handed alpha
Helix 11	AB2	A	223	234	Right-handed alpha
Helix 12	AB3	A	243	253	Right-handed alpha
Helix 13	AB4	A	268	279	Right-handed alpha
Helix 14	AB5	A	292	302	Right-handed alpha
Helix 15	AB6	A	309	314	Right-handed alpha
Helix 16	AB7	A	347	355	Right-handed alpha
Helix 17	AB8	A	389	397	Right-handed alpha
Helix 18	AB9	A	398	400	Right-handed 310
Helix 19	AC1	A	418	432	Right-handed alpha
Helix 20	AC2	A	433	437	Right-handed 310
Helix 21	AC3	A	455	460	Right-handed 310
Helix 22	AC4	A	577	582	Right-handed 310
Helix 23	AC5	A	587	592	Right-handed alpha
Helix 24	AC6	A	604	612	Right-handed alpha
Helix 25	AC7	A	621	632	Right-handed alpha
Helix 26	AC8	A	632	641	Right-handed alpha
Helix 27	AC9	A	661	667	Right-handed alpha
Helix 28	AD1	A	680	691	Right-handed alpha
Helix 29	AD2	A	702	707	Right-handed alpha
Helix 30	AD3	A	869	878	Right-handed alpha
Helix 31	AD4	B	9	26	Right-handed alpha
Helix 32	AD5	B	29	37	Right-handed alpha
Helix 33	AD6	G	11	24	Right-handed alpha
Helix 34	AD7	G	29	46	Right-handed alpha

There are 14 sheets in PDB entry 9Y7H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	116	122	anti-parallel
Strand 3	A	103	108	anti-parallel
Strand 4	A	69	74	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	51	55	anti-parallel
Strand 3	A	61	65	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	202	203	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	290	291	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	376	377	anti-parallel
Strand 3	A	387	388	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	786	first strand
Strand 2	A	726	736	anti-parallel
Strand 3	A	837	845	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	750	first strand
Strand 2	A	793	800	anti-parallel
Strand 3	A	805	812	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	69	72	anti-parallel
Strand 3	B	80	83	anti-parallel
Strand 4	B	91	92	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	135	137	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	211	anti-parallel
Strand 4	B	218	221	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	263	264	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	320	first strand
Strand 2	B	327	331	anti-parallel
Strand 3	B	337	338	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y7H

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y7H