Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y7M entry

There are 3 chains in PDB entry 9Y7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 1SER 223
A
 ALA 12SER 204
C
 LEU 0CYS 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9Y7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
28 32Right-handed 310
Helix 2
AA2
B
53 57Right-handed 310
Helix 3
AA3
B
89 93Right-handed 310
Helix 4
AA4
B
139 141Right-handed 310
Helix 5
AA5
B
195 197Right-handed 310
Helix 6
AA6
B
209 212Right-handed 310
Helix 7
AA7
A
64 68Right-handed 310
Helix 8
AA8
A
90 104Right-handed alpha
Helix 9
AA9
A
119 128Right-handed alpha
Helix 10
AB1
A
176 184Right-handed alpha
Helix 11
AB2
A
188 204Right-handed alpha
Helix 12
AB3
C
84 88Right-handed 310
Helix 13
AB4
C
126 133Right-handed alpha
Helix 14
AB5
C
188 194Right-handed alpha
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There are 13 sheets in PDB entry 9Y7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
70 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
115 119parallel
Strand 3
B
94 101anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
60 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
115 119parallel
Strand 3
B
94 101anti-parallel
Strand 4
B
108 111anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
143 153anti-parallel
Strand 3
B
184 193anti-parallel
Strand 4
B
171 173anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
202 208anti-parallel
Strand 3
B
213 214anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 161first strand
Strand 2
B
202 208anti-parallel
Strand 3
B
217 219anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 78first strand
Strand 2
A
81 88anti-parallel
Strand 3
A
14 21anti-parallel
Strand 4
A
172 174anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
157 160parallel
Strand 3
A
132 134anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
75 80anti-parallel
Strand 4
C
67 72anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
107 111parallel
Strand 3
C
89 95anti-parallel
Strand 4
C
38 43anti-parallel
Strand 5
C
50 54anti-parallel
Strand 6
C
58 59anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
107 111parallel
Strand 3
C
89 95anti-parallel
Strand 4
C
102 103anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 123first strand
Strand 2
C
134 144anti-parallel
Strand 3
C
178 187anti-parallel
Strand 4
C
164 168anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 160first strand
Strand 2
C
150 155anti-parallel
Strand 3
C
196 202anti-parallel
Strand 4
C
210 215anti-parallel
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