Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9Y80 entry

There are 5 chains in PDB entry 9Y80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 42	HIS 450
B	LEU 42	HIS 450
C	LEU 42	VAL 449
D	LEU 42	HIS 450
E	LEU 42	HIS 450

There are 51 helices in PDB entry 9Y80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	52	Right-handed alpha
Helix 2	AA2	A	53	57	Right-handed 310
Helix 3	AA3	A	105	108	Right-handed 310
Helix 4	AA4	A	120	127	Right-handed 310
Helix 5	AA5	A	254	261	Right-handed alpha
Helix 6	AA6	A	261	274	Right-handed alpha
Helix 7	AA7	A	275	277	Right-handed 310
Helix 8	AA8	A	282	305	Right-handed alpha
Helix 9	AA9	A	315	343	Right-handed alpha
Helix 10	AB1	A	410	443	Right-handed alpha
Helix 11	AB2	B	43	53	Right-handed alpha
Helix 12	AB3	B	54	57	Right-handed 310
Helix 13	AB4	B	105	108	Right-handed 310
Helix 14	AB5	B	120	127	Right-handed 310
Helix 15	AB6	B	253	261	Right-handed alpha
Helix 16	AB7	B	261	274	Right-handed alpha
Helix 17	AB8	B	275	277	Right-handed 310
Helix 18	AB9	B	282	305	Right-handed alpha
Helix 19	AC1	B	315	344	Right-handed alpha
Helix 20	AC2	B	411	443	Right-handed alpha
Helix 21	AC3	C	43	53	Right-handed alpha
Helix 22	AC4	C	54	57	Right-handed 310
Helix 23	AC5	C	105	108	Right-handed 310
Helix 24	AC6	C	120	127	Right-handed 310
Helix 25	AC7	C	254	261	Right-handed alpha
Helix 26	AC8	C	261	274	Right-handed alpha
Helix 27	AC9	C	275	278	Right-handed 310
Helix 28	AD1	C	282	305	Right-handed alpha
Helix 29	AD2	C	315	343	Right-handed alpha
Helix 30	AD3	C	410	443	Right-handed alpha
Helix 31	AD4	D	43	53	Right-handed alpha
Helix 32	AD5	D	54	57	Right-handed 310
Helix 33	AD6	D	105	108	Right-handed 310
Helix 34	AD7	D	120	127	Right-handed 310
Helix 35	AD8	D	254	261	Right-handed alpha
Helix 36	AD9	D	261	273	Right-handed alpha
Helix 37	AE1	D	274	277	Right-handed 310
Helix 38	AE2	D	282	305	Right-handed alpha
Helix 39	AE3	D	315	343	Right-handed alpha
Helix 40	AE4	D	411	443	Right-handed alpha
Helix 41	AE5	E	43	52	Right-handed alpha
Helix 42	AE6	E	53	57	Right-handed 310
Helix 43	AE7	E	105	108	Right-handed 310
Helix 44	AE8	E	120	127	Right-handed 310
Helix 45	AE9	E	254	261	Right-handed alpha
Helix 46	AF1	E	261	273	Right-handed alpha
Helix 47	AF2	E	274	278	Right-handed 310
Helix 48	AF3	E	282	305	Right-handed alpha
Helix 49	AF4	E	315	343	Right-handed alpha
Helix 50	AF5	E	411	443	Right-handed alpha
Helix 51	AF6	E	443	449	Right-handed alpha

There are 24 sheets in PDB entry 9Y80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	159	171	anti-parallel
Strand 4	A	91	103	anti-parallel
Strand 5	A	71	86	anti-parallel
Strand 6	A	200	204	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	142	first strand
Strand 2	A	159	171	anti-parallel
Strand 3	A	91	103	anti-parallel
Strand 4	A	71	86	anti-parallel
Strand 5	A	210	212	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	183	192	anti-parallel
Strand 3	A	243	252	anti-parallel
Strand 4	A	221	231	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	239	241	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	150	155	anti-parallel
Strand 3	B	159	171	anti-parallel
Strand 4	B	91	103	anti-parallel
Strand 5	B	71	86	anti-parallel
Strand 6	B	200	204	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	142	first strand
Strand 2	B	159	171	anti-parallel
Strand 3	B	91	103	anti-parallel
Strand 4	B	71	86	anti-parallel
Strand 5	B	210	212	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	183	192	anti-parallel
Strand 3	B	243	252	anti-parallel
Strand 4	B	221	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	183	192	anti-parallel
Strand 3	B	243	252	anti-parallel
Strand 4	B	228	231	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	239	241	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	150	155	anti-parallel
Strand 3	C	159	171	anti-parallel
Strand 4	C	91	103	anti-parallel
Strand 5	C	71	86	anti-parallel
Strand 6	C	200	204	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	142	first strand
Strand 2	C	159	171	anti-parallel
Strand 3	C	91	103	anti-parallel
Strand 4	C	71	86	anti-parallel
Strand 5	C	210	212	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	183	192	anti-parallel
Strand 3	C	243	252	anti-parallel
Strand 4	C	221	223	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	183	192	anti-parallel
Strand 3	C	243	252	anti-parallel
Strand 4	C	228	231	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	236	first strand
Strand 2	C	239	241	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	119	first strand
Strand 2	D	150	155	anti-parallel
Strand 3	D	159	171	anti-parallel
Strand 4	D	91	103	anti-parallel
Strand 5	D	71	86	anti-parallel
Strand 6	D	200	204	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	142	first strand
Strand 2	D	159	171	anti-parallel
Strand 3	D	91	103	anti-parallel
Strand 4	D	71	86	anti-parallel
Strand 5	D	210	212	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	183	192	anti-parallel
Strand 3	D	243	252	anti-parallel
Strand 4	D	221	223	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	183	192	anti-parallel
Strand 3	D	243	252	anti-parallel
Strand 4	D	228	231	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	236	first strand
Strand 2	D	239	241	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	119	first strand
Strand 2	E	150	155	anti-parallel
Strand 3	E	159	171	anti-parallel
Strand 4	E	91	103	anti-parallel
Strand 5	E	71	86	anti-parallel
Strand 6	E	200	204	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	142	first strand
Strand 2	E	159	171	anti-parallel
Strand 3	E	91	103	anti-parallel
Strand 4	E	71	86	anti-parallel
Strand 5	E	210	212	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	183	192	anti-parallel
Strand 3	E	243	252	anti-parallel
Strand 4	E	221	223	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	183	192	anti-parallel
Strand 3	E	243	252	anti-parallel
Strand 4	E	228	231	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	236	first strand
Strand 2	E	239	241	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9Y80

Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y80