Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y83 entry

There are 4 chains in PDB entry 9Y83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1THR 332
B
 HIS 1THR 332
C
 HIS 1THR 332
D
 HIS 1THR 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 9Y83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
11 15Right-handed 310
Helix 3
AA3
A
16 37Right-handed alpha
Helix 4
AA4
A
57 70Right-handed alpha
Helix 5
AA5
A
89 98Right-handed alpha
Helix 6
AA6
A
110 122Right-handed alpha
Helix 7
AA7
A
134 150Right-handed alpha
Helix 8
AA8
A
152 155Right-handed 310
Helix 9
AA9
A
166 179Right-handed alpha
Helix 10
AB1
A
188 192Right-handed 310
Helix 11
AB2
A
194 209Right-handed alpha
Helix 12
AB3
A
217 222Right-handed alpha
Helix 13
AB4
A
241 251Right-handed alpha
Helix 14
AB5
A
252 254Right-handed 310
Helix 15
AB6
A
256 263Right-handed alpha
Helix 16
AB7
A
282 293Right-handed alpha
Helix 17
AB8
A
301 306Right-handed alpha
Helix 18
AB9
A
311 332Right-handed alpha
Helix 19
AC1
B
6 10Right-handed 310
Helix 20
AC2
B
11 15Right-handed 310
Helix 21
AC3
B
16 37Right-handed alpha
Helix 22
AC4
B
57 70Right-handed alpha
Helix 23
AC5
B
89 98Right-handed alpha
Helix 24
AC6
B
110 122Right-handed alpha
Helix 25
AC7
B
134 150Right-handed alpha
Helix 26
AC8
B
152 155Right-handed 310
Helix 27
AC9
B
166 179Right-handed alpha
Helix 28
AD1
B
188 192Right-handed 310
Helix 29
AD2
B
194 209Right-handed alpha
Helix 30
AD3
B
217 222Right-handed alpha
Helix 31
AD4
B
241 251Right-handed alpha
Helix 32
AD5
B
252 254Right-handed 310
Helix 33
AD6
B
256 262Right-handed alpha
Helix 34
AD7
B
282 293Right-handed alpha
Helix 35
AD8
B
301 307Right-handed alpha
Helix 36
AD9
B
311 332Right-handed alpha
Helix 37
AE1
C
6 10Right-handed 310
Helix 38
AE2
C
11 15Right-handed 310
Helix 39
AE3
C
16 37Right-handed alpha
Helix 40
AE4
C
57 70Right-handed alpha
Helix 41
AE5
C
89 98Right-handed alpha
Helix 42
AE6
C
110 122Right-handed alpha
Helix 43
AE7
C
134 150Right-handed alpha
Helix 44
AE8
C
152 155Right-handed 310
Helix 45
AE9
C
166 179Right-handed alpha
Helix 46
AF1
C
188 192Right-handed 310
Helix 47
AF2
C
194 209Right-handed alpha
Helix 48
AF3
C
217 223Right-handed alpha
Helix 49
AF4
C
241 251Right-handed alpha
Helix 50
AF5
C
252 254Right-handed 310
Helix 51
AF6
C
256 263Right-handed alpha
Helix 52
AF7
C
282 293Right-handed alpha
Helix 53
AF8
C
301 307Right-handed alpha
Helix 54
AF9
C
311 332Right-handed alpha
Helix 55
AG1
D
6 10Right-handed 310
Helix 56
AG2
D
11 15Right-handed 310
Helix 57
AG3
D
16 37Right-handed alpha
Helix 58
AG4
D
57 70Right-handed alpha
Helix 59
AG5
D
89 98Right-handed alpha
Helix 60
AG6
D
110 122Right-handed alpha
Helix 61
AG7
D
134 150Right-handed alpha
Helix 62
AG8
D
152 155Right-handed 310
Helix 63
AG9
D
166 179Right-handed alpha
Helix 64
AH1
D
188 192Right-handed 310
Helix 65
AH2
D
194 209Right-handed alpha
Helix 66
AH3
D
217 223Right-handed alpha
Helix 67
AH4
D
241 251Right-handed alpha
Helix 68
AH5
D
252 254Right-handed 310
Helix 69
AH6
D
256 263Right-handed alpha
Helix 70
AH7
D
282 293Right-handed alpha
Helix 71
AH8
D
301 306Right-handed alpha
Helix 72
AH9
D
311 332Right-handed alpha
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There are 8 sheets in PDB entry 9Y83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
47 52parallel
Strand 3
A
103 107parallel
Strand 4
A
125 127parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 215first strand
Strand 2
A
182 186parallel
Strand 3
A
157 161parallel
Strand 4
A
227 230parallel
Strand 5
A
269 272parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
47 52parallel
Strand 3
B
103 107parallel
Strand 4
B
125 127parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 215first strand
Strand 2
B
182 186parallel
Strand 3
B
157 161parallel
Strand 4
B
227 230parallel
Strand 5
B
269 272parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 77first strand
Strand 2
C
47 52parallel
Strand 3
C
103 107parallel
Strand 4
C
125 127parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
211 215first strand
Strand 2
C
182 186parallel
Strand 3
C
157 161parallel
Strand 4
C
227 230parallel
Strand 5
C
269 272parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
73 77first strand
Strand 2
D
47 52parallel
Strand 3
D
103 107parallel
Strand 4
D
125 127parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
211 215first strand
Strand 2
D
182 186parallel
Strand 3
D
157 161parallel
Strand 4
D
227 230parallel
Strand 5
D
269 272parallel
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