Analysis of interatomic Contacts of Structural Units in PDB entry:
9Y8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9Y8H entry

There is 1 chain in PDB entry 9Y8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2THR 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 9Y8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
16 37Right-handed alpha
Helix 3
AA3
A
57 70Right-handed alpha
Helix 4
AA4
A
89 101Right-handed alpha
Helix 5
AA5
A
110 122Right-handed alpha
Helix 6
AA6
A
134 148Right-handed alpha
Helix 7
AA7
A
152 155Right-handed 310
Helix 8
AA8
A
166 180Right-handed alpha
Helix 9
AA9
A
188 192Right-handed 310
Helix 10
AB1
A
194 209Right-handed alpha
Helix 11
AB2
A
217 222Right-handed alpha
Helix 12
AB3
A
241 251Right-handed alpha
Helix 13
AB4
A
252 254Right-handed 310
Helix 14
AB5
A
256 263Right-handed alpha
Helix 15
AB6
A
282 293Right-handed alpha
Helix 16
AB7
A
301 307Right-handed alpha
Helix 17
AB8
A
311 332Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9Y8H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
47 52parallel
Strand 3
A
103 107parallel
Strand 4
A
125 129parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 215first strand
Strand 2
A
182 186parallel
Strand 3
A
157 161parallel
Strand 4
A
227 230parallel
Strand 5
A
269 272parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il